miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 214351 0.67 0.918734
Target:  5'- cGUGGaCGUCguUUCUC-UCCUCcGUUCGCUc -3'
miRNA:   3'- -CGCC-GCGG--AGGAGaAGGAG-CAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 231700 0.67 0.918734
Target:  5'- cUGGaUGCCUUaccaUCUggCCUUGUUCGUCg -3'
miRNA:   3'- cGCC-GCGGAGg---AGAa-GGAGCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 57947 0.67 0.918734
Target:  5'- aGCGGUcCCUCCUCgaUCUcgcuaucaucaUCGUccUCGCUg -3'
miRNA:   3'- -CGCCGcGGAGGAGa-AGG-----------AGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 227754 0.67 0.918734
Target:  5'- uUGGUccGCUgcuucuggUUCUCUUCCUCGUcggaggagUCGCCc -3'
miRNA:   3'- cGCCG--CGG--------AGGAGAAGGAGCA--------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 206960 0.67 0.918734
Target:  5'- uUGGCGCCUucCCUCUcuaucucCCUCuaUCGUCg -3'
miRNA:   3'- cGCCGCGGA--GGAGAa------GGAGcaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 195785 0.67 0.917108
Target:  5'- aGCGGCGCggcucucgaccccuUUCCUcCUUCC-CcUUCGCUc -3'
miRNA:   3'- -CGCCGCG--------------GAGGA-GAAGGaGcAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 110927 0.67 0.913236
Target:  5'- cGCGGcCGCCccgucgucgUCCUCcUCCUCcccgGCCg -3'
miRNA:   3'- -CGCC-GCGG---------AGGAGaAGGAGcaagCGG- -5'
14183 3' -57.6 NC_003521.1 + 129440 0.67 0.913236
Target:  5'- cGCaGCGCCUCgaacaUC-UCCUCGcccgCGCUg -3'
miRNA:   3'- -CGcCGCGGAGg----AGaAGGAGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 194759 0.67 0.913236
Target:  5'- cCGcGCGCUUUCUCUucccuucuUCCUCacgUCGCUg -3'
miRNA:   3'- cGC-CGCGGAGGAGA--------AGGAGca-AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 22315 0.67 0.913236
Target:  5'- aCGGUcuGCCUgCUgg-CCUgGUUCGCCu -3'
miRNA:   3'- cGCCG--CGGAgGAgaaGGAgCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 96140 0.67 0.913236
Target:  5'- gGCGGCGUCcCgCUCUcucUCCUC--UCGCa -3'
miRNA:   3'- -CGCCGCGGaG-GAGA---AGGAGcaAGCGg -5'
14183 3' -57.6 NC_003521.1 + 105017 0.67 0.912675
Target:  5'- cGCcGCGCCUCC-CUccgccgcugcuccUCCUCccgcagCGCCa -3'
miRNA:   3'- -CGcCGCGGAGGaGA-------------AGGAGcaa---GCGG- -5'
14183 3' -57.6 NC_003521.1 + 203439 0.67 0.907524
Target:  5'- -gGGCGCCcCCgccgCCUCGaacaccgcagUCGCCg -3'
miRNA:   3'- cgCCGCGGaGGagaaGGAGCa---------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 192108 0.67 0.907524
Target:  5'- cCGGCGUCUCCaccUCUcccggCCUCGU-CGgCu -3'
miRNA:   3'- cGCCGCGGAGG---AGAa----GGAGCAaGCgG- -5'
14183 3' -57.6 NC_003521.1 + 223388 0.67 0.907524
Target:  5'- cGCGGCGCC-CCgacgCgggCCgUGUggCGCCc -3'
miRNA:   3'- -CGCCGCGGaGGa---Gaa-GGaGCAa-GCGG- -5'
14183 3' -57.6 NC_003521.1 + 76880 0.67 0.907524
Target:  5'- cGCGGCcgagacuCCUCCUCg-CCUCuuucgUUGCCg -3'
miRNA:   3'- -CGCCGc------GGAGGAGaaGGAGca---AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 62816 0.67 0.907524
Target:  5'- cGUGGcCGCCUCCg--UCCUacc-CGCCc -3'
miRNA:   3'- -CGCC-GCGGAGGagaAGGAgcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 6266 0.67 0.907524
Target:  5'- uCGGCGCCaCCUCU-CUUCG--CGCUc -3'
miRNA:   3'- cGCCGCGGaGGAGAaGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 197288 0.67 0.906941
Target:  5'- cGCGGCGUCUCucggcucggccguCUCUUUCUCugaucuggUCgGCCa -3'
miRNA:   3'- -CGCCGCGGAG-------------GAGAAGGAGca------AG-CGG- -5'
14183 3' -57.6 NC_003521.1 + 223343 0.67 0.906941
Target:  5'- gGCGGCGCCgcuaccggugccgUCgUCUcUCCUcCGagCGCUg -3'
miRNA:   3'- -CGCCGCGG-------------AGgAGA-AGGA-GCaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.