miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 80909 1.14 0.001894
Target:  5'- gGCGGCGCCUCCUCUUCCUCGUUCGCCg -3'
miRNA:   3'- -CGCCGCGGAGGAGAAGGAGCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 4330 0.71 0.726495
Target:  5'- gGUGGCugguCCUCCUCggUCUCGgacggaccggUUCGCCg -3'
miRNA:   3'- -CGCCGc---GGAGGAGaaGGAGC----------AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 89552 0.7 0.754241
Target:  5'- uGCGG-GCCcacUCgUCgcgcUCCUCGUcgUCGCCg -3'
miRNA:   3'- -CGCCgCGG---AGgAGa---AGGAGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 221357 0.66 0.942994
Target:  5'- uGCGGCGgUagaggaggggUCCUCgucgUCCUCcucUUCGUCu -3'
miRNA:   3'- -CGCCGCgG----------AGGAGa---AGGAGc--AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 185362 0.77 0.385924
Target:  5'- gGCGGCGCagugCCUCUUCCa-GcgCGCCg -3'
miRNA:   3'- -CGCCGCGga--GGAGAAGGagCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 109941 0.77 0.401964
Target:  5'- aCGGUGCCgacgcugauacUCCUCaUCCUCGUcaucguccUCGCCg -3'
miRNA:   3'- cGCCGCGG-----------AGGAGaAGGAGCA--------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 107342 0.74 0.543728
Target:  5'- aGCGGCGCCaggugaUCCUCgaCCUCGggCGg- -3'
miRNA:   3'- -CGCCGCGG------AGGAGaaGGAGCaaGCgg -5'
14183 3' -57.6 NC_003521.1 + 212583 0.73 0.58195
Target:  5'- uCGGCGCCgUCUUCUUCCUC---CGUCa -3'
miRNA:   3'- cGCCGCGG-AGGAGAAGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 142435 0.72 0.649846
Target:  5'- aGCaGCGCCgCCgaagCCUCGggCGCCa -3'
miRNA:   3'- -CGcCGCGGaGGagaaGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 162659 0.71 0.707617
Target:  5'- uCGGCGCCaCCaggaugugCCUCGUUCGCg -3'
miRNA:   3'- cGCCGCGGaGGagaa----GGAGCAAGCGg -5'
14183 3' -57.6 NC_003521.1 + 195871 0.72 0.673098
Target:  5'- cGCGGUgucGCCgcccuuccuccccgUCCUCUUCgUCGUccucgucuucguccUCGCCg -3'
miRNA:   3'- -CGCCG---CGG--------------AGGAGAAGgAGCA--------------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 166015 0.73 0.630409
Target:  5'- uCGGCGCCgUCCg--UCCgCGUcUCGCCg -3'
miRNA:   3'- cGCCGCGG-AGGagaAGGaGCA-AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 197194 0.83 0.18443
Target:  5'- gGCGGCcgccGCCUCCUCcucgUCCUCGUugUCGUCg -3'
miRNA:   3'- -CGCCG----CGGAGGAGa---AGGAGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 72319 0.72 0.678888
Target:  5'- gGCGuCGCCgUCCUCcgCCUCcGUcUCGCCg -3'
miRNA:   3'- -CGCcGCGG-AGGAGaaGGAG-CA-AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 160390 0.78 0.370313
Target:  5'- uCGGCGCCUUCaccaUCaUCCUCG-UCGCCu -3'
miRNA:   3'- cGCCGCGGAGG----AGaAGGAGCaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 24573 0.73 0.620688
Target:  5'- uCGGCgGCCUCCUCgUCCaccucccgcUCGUagGCCu -3'
miRNA:   3'- cGCCG-CGGAGGAGaAGG---------AGCAagCGG- -5'
14183 3' -57.6 NC_003521.1 + 160340 0.71 0.707617
Target:  5'- cGCGGUgGCCUCCg--UCgUCGagggcgUCGCCg -3'
miRNA:   3'- -CGCCG-CGGAGGagaAGgAGCa-----AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 53054 0.71 0.745079
Target:  5'- gGCGGCG-UUCUUCUUUgaUCGggCGCCg -3'
miRNA:   3'- -CGCCGCgGAGGAGAAGg-AGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 175727 0.78 0.370313
Target:  5'- uCGGCGCCg-CUCUUCCUCcuggCGCCg -3'
miRNA:   3'- cGCCGCGGagGAGAAGGAGcaa-GCGG- -5'
14183 3' -57.6 NC_003521.1 + 205336 0.75 0.488092
Target:  5'- aCGGCGCCUCCUCggCggCGgcagcugCGCCg -3'
miRNA:   3'- cGCCGCGGAGGAGaaGgaGCaa-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.