miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 236859 0.69 0.798437
Target:  5'- aCGGUGCCccgggUCCUCcgcUUCUUCGgauaCGCCg -3'
miRNA:   3'- cGCCGCGG-----AGGAG---AAGGAGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 236375 0.69 0.831401
Target:  5'- gGCGGUGCCUUCagaucgCCUCGggCGUUc -3'
miRNA:   3'- -CGCCGCGGAGGagaa--GGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 234795 0.67 0.9016
Target:  5'- aCGGCuuacucgucgGgCUCCUCggCCUCGU-CGUCg -3'
miRNA:   3'- cGCCG----------CgGAGGAGaaGGAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 233784 0.69 0.798437
Target:  5'- -gGGCGUCUCCgguggUCUUUCUaCGUgcagcagCGCCa -3'
miRNA:   3'- cgCCGCGGAGG-----AGAAGGA-GCAa------GCGG- -5'
14183 3' -57.6 NC_003521.1 + 233658 0.67 0.889124
Target:  5'- cCGGaucaaaaGUUgUCCUCUUCCUCGUcgUCGUCc -3'
miRNA:   3'- cGCCg------CGG-AGGAGAAGGAGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 233496 0.67 0.889124
Target:  5'- cGCGaG-GCCagggUCCUgUUCCUCGUuUCGCa -3'
miRNA:   3'- -CGC-CgCGG----AGGAgAAGGAGCA-AGCGg -5'
14183 3' -57.6 NC_003521.1 + 231700 0.67 0.918734
Target:  5'- cUGGaUGCCUUaccaUCUggCCUUGUUCGUCg -3'
miRNA:   3'- cGCC-GCGGAGg---AGAa-GGAGCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 227754 0.67 0.918734
Target:  5'- uUGGUccGCUgcuucuggUUCUCUUCCUCGUcggaggagUCGCCc -3'
miRNA:   3'- cGCCG--CGG--------AGGAGAAGGAGCA--------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 225281 0.87 0.11045
Target:  5'- -gGGCGCCcCCUCUUCCcagcgCGUUCGCCa -3'
miRNA:   3'- cgCCGCGGaGGAGAAGGa----GCAAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 223660 0.66 0.929084
Target:  5'- uGCcaGCGCUgcgCCUCggCCUCG--CGCCg -3'
miRNA:   3'- -CGc-CGCGGa--GGAGaaGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 223388 0.67 0.907524
Target:  5'- cGCGGCGCC-CCgacgCgggCCgUGUggCGCCc -3'
miRNA:   3'- -CGCCGCGGaGGa---Gaa-GGaGCAa-GCGG- -5'
14183 3' -57.6 NC_003521.1 + 223343 0.67 0.906941
Target:  5'- gGCGGCGCCgcuaccggugccgUCgUCUcUCCUcCGagCGCUg -3'
miRNA:   3'- -CGCCGCGG-------------AGgAGA-AGGA-GCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 223303 0.66 0.942994
Target:  5'- aGCGGaugGCgUCCUCgcagCgCUCGUcgCGCUg -3'
miRNA:   3'- -CGCCg--CGgAGGAGaa--G-GAGCAa-GCGG- -5'
14183 3' -57.6 NC_003521.1 + 221938 0.8 0.292384
Target:  5'- cGCGGCGCCUCg---UCCUCGU-CGCUg -3'
miRNA:   3'- -CGCCGCGGAGgagaAGGAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 221848 0.85 0.144888
Target:  5'- cGCGGCGCgUCCUCgacccccUCCUCGUugUCGCUg -3'
miRNA:   3'- -CGCCGCGgAGGAGa------AGGAGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 221357 0.66 0.942994
Target:  5'- uGCGGCGgUagaggaggggUCCUCgucgUCCUCcucUUCGUCu -3'
miRNA:   3'- -CGCCGCgG----------AGGAGa---AGGAGc--AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 221191 0.69 0.823388
Target:  5'- ---aCGCCUCUUCUcCCUCGUcCGUCa -3'
miRNA:   3'- cgccGCGGAGGAGAaGGAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 218654 0.68 0.882578
Target:  5'- gGCGGCGCCUCgUCccUCUCcacCGUCu -3'
miRNA:   3'- -CGCCGCGGAGgAGaaGGAGcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 216559 0.68 0.861754
Target:  5'- aGCGGCcaggacGCUucauaucgcUCCUgUUCCUCG-UCGCUc -3'
miRNA:   3'- -CGCCG------CGG---------AGGAgAAGGAGCaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 214750 0.72 0.637214
Target:  5'- aGCGccgcCGUCUCCUCUUCCUccucuccccccuccCGcUCGCCg -3'
miRNA:   3'- -CGCc---GCGGAGGAGAAGGA--------------GCaAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.