Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14183 | 5' | -55 | NC_003521.1 | + | 209555 | 0.69 | 0.903176 |
Target: 5'- -cGGCgGGGUggcgGCGACGGUGGcGGGGGu -3' miRNA: 3'- cuCCGgCUCA----UGCUGCUACU-CCUCUu -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 111371 | 0.69 | 0.896869 |
Target: 5'- cGGcGCCGGGacuaGCGGCGAcgGAGGGGAc -3' miRNA: 3'- cUC-CGGCUCa---UGCUGCUa-CUCCUCUu -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 66883 | 0.69 | 0.883589 |
Target: 5'- -uGGCCGAGaccagugACGAggaggcaGAUGAGGGGGAg -3' miRNA: 3'- cuCCGGCUCa------UGCUg------CUACUCCUCUU- -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 154687 | 0.69 | 0.876623 |
Target: 5'- gGAGGCuaccgCGuGUGCGACGcgcgcGAGGAGAAc -3' miRNA: 3'- -CUCCG-----GCuCAUGCUGCua---CUCCUCUU- -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 47834 | 0.7 | 0.833854 |
Target: 5'- aGAGGCUGAGUAUGACGAgcgugcccgccgugGccGAGAAc -3' miRNA: 3'- -CUCCGGCUCAUGCUGCUa-------------CucCUCUU- -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 87371 | 0.72 | 0.778253 |
Target: 5'- gGAGGCCGAGguggAgGACGAggcggcgGAGGuGAc -3' miRNA: 3'- -CUCCGGCUCa---UgCUGCUa------CUCCuCUu -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 216039 | 0.72 | 0.75027 |
Target: 5'- aGGGCCagucgcGGGUAaaGACGAUGAGGAGGu -3' miRNA: 3'- cUCCGG------CUCAUg-CUGCUACUCCUCUu -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 35799 | 0.72 | 0.731096 |
Target: 5'- aAGGCCGAcUACGGCGGcgUGGGcGAGAAc -3' miRNA: 3'- cUCCGGCUcAUGCUGCU--ACUC-CUCUU- -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 90873 | 0.76 | 0.551613 |
Target: 5'- -cGGCCGAGgGgGACGggGAGGGGGAc -3' miRNA: 3'- cuCCGGCUCaUgCUGCuaCUCCUCUU- -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 172431 | 0.77 | 0.503125 |
Target: 5'- cGAGGCgGAGgaggaagACGACGAggaGAGGGGAGg -3' miRNA: 3'- -CUCCGgCUCa------UGCUGCUa--CUCCUCUU- -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 29389 | 0.8 | 0.347626 |
Target: 5'- cGAGGCCGAGgaggACGACGAcGAGGAc-- -3' miRNA: 3'- -CUCCGGCUCa---UGCUGCUaCUCCUcuu -5' |
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14183 | 5' | -55 | NC_003521.1 | + | 80952 | 0.92 | 0.065868 |
Target: 5'- gGAGGCCGAugACGACGAUGAGGAGAAg -3' miRNA: 3'- -CUCCGGCUcaUGCUGCUACUCCUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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