miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 140767 0.67 0.945361
Target:  5'- -cGuGCCGGGcgaugACGACGAagaagGAGGAGGGg -3'
miRNA:   3'- cuC-CGGCUCa----UGCUGCUa----CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 172324 0.67 0.945361
Target:  5'- cAGGCCGGucGCGGCGGacgggUGAGGGGc- -3'
miRNA:   3'- cUCCGGCUcaUGCUGCU-----ACUCCUCuu -5'
14183 5' -55 NC_003521.1 + 116955 0.67 0.945361
Target:  5'- cGAGGa-GAGaACGGCGGgaaacGAGGAGAAg -3'
miRNA:   3'- -CUCCggCUCaUGCUGCUa----CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 146649 0.68 0.936201
Target:  5'- -cGGCCacg-ACGACGgcGAGGAGGAc -3'
miRNA:   3'- cuCCGGcucaUGCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 18979 0.68 0.936201
Target:  5'- gGGGGUCGAGgacgcgccgcGCGACGA--GGGAGAc -3'
miRNA:   3'- -CUCCGGCUCa---------UGCUGCUacUCCUCUu -5'
14183 5' -55 NC_003521.1 + 229245 0.68 0.936201
Target:  5'- cGGGCCGcggaGGUGCuuGCGGUGAGG-GAAg -3'
miRNA:   3'- cUCCGGC----UCAUGc-UGCUACUCCuCUU- -5'
14183 5' -55 NC_003521.1 + 148890 0.68 0.936201
Target:  5'- -cGGCCGuGgcCGACGccGAGGAGc- -3'
miRNA:   3'- cuCCGGCuCauGCUGCuaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 123560 0.68 0.931275
Target:  5'- -cGGCCGAcgACGGCGGUGGcGGGAu -3'
miRNA:   3'- cuCCGGCUcaUGCUGCUACUcCUCUu -5'
14183 5' -55 NC_003521.1 + 100572 0.68 0.931275
Target:  5'- aGGGCaCGAGgaggACGACGAcGcGGAGGGa -3'
miRNA:   3'- cUCCG-GCUCa---UGCUGCUaCuCCUCUU- -5'
14183 5' -55 NC_003521.1 + 119978 0.68 0.926117
Target:  5'- aAGGCCGAGUccagcAUGGCacccGAGGAGGAu -3'
miRNA:   3'- cUCCGGCUCA-----UGCUGcua-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 130864 0.68 0.926117
Target:  5'- cGAGGaCGAugACGAgGAUGAGGAGu- -3'
miRNA:   3'- -CUCCgGCUcaUGCUgCUACUCCUCuu -5'
14183 5' -55 NC_003521.1 + 37409 0.68 0.926117
Target:  5'- cGGGCCuuGUGCGACGGccUG-GGAGGc -3'
miRNA:   3'- cUCCGGcuCAUGCUGCU--ACuCCUCUu -5'
14183 5' -55 NC_003521.1 + 43603 0.68 0.926117
Target:  5'- cGAGGacgaCGAGcGCGACGAcaacgaggacGAGGAGGAg -3'
miRNA:   3'- -CUCCg---GCUCaUGCUGCUa---------CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 19703 0.68 0.926117
Target:  5'- cAGGCCGGGacaAgGGCGAUGAGaAGAGu -3'
miRNA:   3'- cUCCGGCUCa--UgCUGCUACUCcUCUU- -5'
14183 5' -55 NC_003521.1 + 19438 0.68 0.926117
Target:  5'- cAGGaCCGGGaa-GACGAaGAGGAGGAc -3'
miRNA:   3'- cUCC-GGCUCaugCUGCUaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 38232 0.68 0.925589
Target:  5'- aGGGGCCGAGgagagcauugACGcCGGUGAucucagcGGAGAc -3'
miRNA:   3'- -CUCCGGCUCa---------UGCuGCUACU-------CCUCUu -5'
14183 5' -55 NC_003521.1 + 19042 0.68 0.920728
Target:  5'- --cGCCGAGgaaGACGAUGAaacGGAGAu -3'
miRNA:   3'- cucCGGCUCaugCUGCUACU---CCUCUu -5'
14183 5' -55 NC_003521.1 + 151252 0.68 0.915107
Target:  5'- -cGGCCuGGGacgGCGACGAcGAGGAGc- -3'
miRNA:   3'- cuCCGG-CUCa--UGCUGCUaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 7974 0.68 0.915107
Target:  5'- -cGGCCGGGaggguccGCGGCGGcgGGGGAGGu -3'
miRNA:   3'- cuCCGGCUCa------UGCUGCUa-CUCCUCUu -5'
14183 5' -55 NC_003521.1 + 113363 0.68 0.909256
Target:  5'- cGGGCCGGG---GGCGAgGAGGAGGGu -3'
miRNA:   3'- cUCCGGCUCaugCUGCUaCUCCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.