miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 86700 0.66 0.967496
Target:  5'- cGGGCCGcGgcgGCGACGAcGAGGcGGu -3'
miRNA:   3'- cUCCGGCuCa--UGCUGCUaCUCCuCUu -5'
14183 5' -55 NC_003521.1 + 87371 0.72 0.778253
Target:  5'- gGAGGCCGAGguggAgGACGAggcggcgGAGGuGAc -3'
miRNA:   3'- -CUCCGGCUCa---UgCUGCUa------CUCCuCUu -5'
14183 5' -55 NC_003521.1 + 90873 0.76 0.551613
Target:  5'- -cGGCCGAGgGgGACGggGAGGGGGAc -3'
miRNA:   3'- cuCCGGCUCaUgCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 91353 0.66 0.970447
Target:  5'- -uGGUCGGG-AgGACGGUGgGGGAGGGg -3'
miRNA:   3'- cuCCGGCUCaUgCUGCUAC-UCCUCUU- -5'
14183 5' -55 NC_003521.1 + 98823 0.66 0.967496
Target:  5'- -cGGCCGGGaucugaggugACGGCGAgGAGGuGAu -3'
miRNA:   3'- cuCCGGCUCa---------UGCUGCUaCUCCuCUu -5'
14183 5' -55 NC_003521.1 + 100572 0.68 0.931275
Target:  5'- aGGGCaCGAGgaggACGACGAcGcGGAGGGa -3'
miRNA:   3'- cUCCG-GCUCa---UGCUGCUaCuCCUCUU- -5'
14183 5' -55 NC_003521.1 + 111371 0.69 0.896869
Target:  5'- cGGcGCCGGGacuaGCGGCGAcgGAGGGGAc -3'
miRNA:   3'- cUC-CGGCUCa---UGCUGCUa-CUCCUCUu -5'
14183 5' -55 NC_003521.1 + 113363 0.68 0.909256
Target:  5'- cGGGCCGGG---GGCGAgGAGGAGGGu -3'
miRNA:   3'- cUCCGGCUCaugCUGCUaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 116955 0.67 0.945361
Target:  5'- cGAGGa-GAGaACGGCGGgaaacGAGGAGAAg -3'
miRNA:   3'- -CUCCggCUCaUGCUGCUa----CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 119978 0.68 0.926117
Target:  5'- aAGGCCGAGUccagcAUGGCacccGAGGAGGAu -3'
miRNA:   3'- cUCCGGCUCA-----UGCUGcua-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 123560 0.68 0.931275
Target:  5'- -cGGCCGAcgACGGCGGUGGcGGGAu -3'
miRNA:   3'- cuCCGGCUcaUGCUGCUACUcCUCUu -5'
14183 5' -55 NC_003521.1 + 130864 0.68 0.926117
Target:  5'- cGAGGaCGAugACGAgGAUGAGGAGu- -3'
miRNA:   3'- -CUCCgGCUcaUGCUgCUACUCCUCuu -5'
14183 5' -55 NC_003521.1 + 140767 0.67 0.945361
Target:  5'- -cGuGCCGGGcgaugACGACGAagaagGAGGAGGGg -3'
miRNA:   3'- cuC-CGGCUCa----UGCUGCUa----CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 142272 0.66 0.967496
Target:  5'- --cGCCGGagACGACGAUGGcucGGAGGAa -3'
miRNA:   3'- cucCGGCUcaUGCUGCUACU---CCUCUU- -5'
14183 5' -55 NC_003521.1 + 146649 0.68 0.936201
Target:  5'- -cGGCCacg-ACGACGgcGAGGAGGAc -3'
miRNA:   3'- cuCCGGcucaUGCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 148890 0.68 0.936201
Target:  5'- -cGGCCGuGgcCGACGccGAGGAGc- -3'
miRNA:   3'- cuCCGGCuCauGCUGCuaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 151252 0.68 0.915107
Target:  5'- -cGGCCuGGGacgGCGACGAcGAGGAGc- -3'
miRNA:   3'- cuCCGG-CUCa--UGCUGCUaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 154687 0.69 0.876623
Target:  5'- gGAGGCuaccgCGuGUGCGACGcgcgcGAGGAGAAc -3'
miRNA:   3'- -CUCCG-----GCuCAUGCUGCua---CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 156964 0.66 0.9732
Target:  5'- uGGGUCGAGgACGGag--GAGGAGGAg -3'
miRNA:   3'- cUCCGGCUCaUGCUgcuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 159648 0.67 0.948352
Target:  5'- cGAGGCCuGGUGCGugGAccaacggcgcacccUGAGGucuucaAGGAg -3'
miRNA:   3'- -CUCCGGcUCAUGCugCU--------------ACUCC------UCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.