miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 653 0.65 0.975764
Target:  5'- cGGGCCccGGGgg-GACGcgGAGGAGGGg -3'
miRNA:   3'- cUCCGG--CUCaugCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 4239 0.67 0.957406
Target:  5'- gGAGGaCCGAG-ACGGgGAgGAGGAcGAGa -3'
miRNA:   3'- -CUCC-GGCUCaUGCUgCUaCUCCU-CUU- -5'
14183 5' -55 NC_003521.1 + 7974 0.68 0.915107
Target:  5'- -cGGCCGGGaggguccGCGGCGGcgGGGGAGGu -3'
miRNA:   3'- cuCCGGCUCa------UGCUGCUa-CUCCUCUu -5'
14183 5' -55 NC_003521.1 + 13115 0.65 0.974761
Target:  5'- aGAGGCCGAGaagacUACGGgaaaaaacaaaaaGGUcGAGGAGGAc -3'
miRNA:   3'- -CUCCGGCUC-----AUGCUg------------CUA-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 13639 0.66 0.96098
Target:  5'- uGGGCUGGGaaggGCGGCGGaGgcGGGAGAAg -3'
miRNA:   3'- cUCCGGCUCa---UGCUGCUaC--UCCUCUU- -5'
14183 5' -55 NC_003521.1 + 18979 0.68 0.936201
Target:  5'- gGGGGUCGAGgacgcgccgcGCGACGA--GGGAGAc -3'
miRNA:   3'- -CUCCGGCUCa---------UGCUGCUacUCCUCUu -5'
14183 5' -55 NC_003521.1 + 19042 0.68 0.920728
Target:  5'- --cGCCGAGgaaGACGAUGAaacGGAGAu -3'
miRNA:   3'- cucCGGCUCaugCUGCUACU---CCUCUu -5'
14183 5' -55 NC_003521.1 + 19438 0.68 0.926117
Target:  5'- cAGGaCCGGGaa-GACGAaGAGGAGGAc -3'
miRNA:   3'- cUCC-GGCUCaugCUGCUaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 19703 0.68 0.926117
Target:  5'- cAGGCCGGGacaAgGGCGAUGAGaAGAGu -3'
miRNA:   3'- cUCCGGCUCa--UgCUGCUACUCcUCUU- -5'
14183 5' -55 NC_003521.1 + 29389 0.8 0.347626
Target:  5'- cGAGGCCGAGgaggACGACGAcGAGGAc-- -3'
miRNA:   3'- -CUCCGGCUCa---UGCUGCUaCUCCUcuu -5'
14183 5' -55 NC_003521.1 + 35799 0.72 0.731096
Target:  5'- aAGGCCGAcUACGGCGGcgUGGGcGAGAAc -3'
miRNA:   3'- cUCCGGCUcAUGCUGCU--ACUC-CUCUU- -5'
14183 5' -55 NC_003521.1 + 36302 0.66 0.965628
Target:  5'- cGAGGCCGGGUGgGGCGcAcccucagucggggcgUGGGGAc-- -3'
miRNA:   3'- -CUCCGGCUCAUgCUGC-U---------------ACUCCUcuu -5'
14183 5' -55 NC_003521.1 + 37409 0.68 0.926117
Target:  5'- cGGGCCuuGUGCGACGGccUG-GGAGGc -3'
miRNA:   3'- cUCCGGcuCAUGCUGCU--ACuCCUCUu -5'
14183 5' -55 NC_003521.1 + 38232 0.68 0.925589
Target:  5'- aGGGGCCGAGgagagcauugACGcCGGUGAucucagcGGAGAc -3'
miRNA:   3'- -CUCCGGCUCa---------UGCuGCUACU-------CCUCUu -5'
14183 5' -55 NC_003521.1 + 40974 0.65 0.975764
Target:  5'- cGGGCCccGGGgg-GACGcgGAGGAGGGg -3'
miRNA:   3'- cUCCGG--CUCaugCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 43603 0.68 0.926117
Target:  5'- cGAGGacgaCGAGcGCGACGAcaacgaggacGAGGAGGAg -3'
miRNA:   3'- -CUCCg---GCUCaUGCUGCUa---------CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 47834 0.7 0.833854
Target:  5'- aGAGGCUGAGUAUGACGAgcgugcccgccgugGccGAGAAc -3'
miRNA:   3'- -CUCCGGCUCAUGCUGCUa-------------CucCUCUU- -5'
14183 5' -55 NC_003521.1 + 53161 0.66 0.9732
Target:  5'- --cGUCGGGgACGGCGgcGAGGAGGu -3'
miRNA:   3'- cucCGGCUCaUGCUGCuaCUCCUCUu -5'
14183 5' -55 NC_003521.1 + 66883 0.69 0.883589
Target:  5'- -uGGCCGAGaccagugACGAggaggcaGAUGAGGGGGAg -3'
miRNA:   3'- cuCCGGCUCa------UGCUg------CUACUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 80952 0.92 0.065868
Target:  5'- gGAGGCCGAugACGACGAUGAGGAGAAg -3'
miRNA:   3'- -CUCCGGCUcaUGCUGCUACUCCUCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.