miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 80952 0.92 0.065868
Target:  5'- gGAGGCCGAugACGACGAUGAGGAGAAg -3'
miRNA:   3'- -CUCCGGCUcaUGCUGCUACUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 29389 0.8 0.347626
Target:  5'- cGAGGCCGAGgaggACGACGAcGAGGAc-- -3'
miRNA:   3'- -CUCCGGCUCa---UGCUGCUaCUCCUcuu -5'
14183 5' -55 NC_003521.1 + 172431 0.77 0.503125
Target:  5'- cGAGGCgGAGgaggaagACGACGAggaGAGGGGAGg -3'
miRNA:   3'- -CUCCGgCUCa------UGCUGCUa--CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 90873 0.76 0.551613
Target:  5'- -cGGCCGAGgGgGACGggGAGGGGGAc -3'
miRNA:   3'- cuCCGGCUCaUgCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 35799 0.72 0.731096
Target:  5'- aAGGCCGAcUACGGCGGcgUGGGcGAGAAc -3'
miRNA:   3'- cUCCGGCUcAUGCUGCU--ACUC-CUCUU- -5'
14183 5' -55 NC_003521.1 + 216039 0.72 0.75027
Target:  5'- aGGGCCagucgcGGGUAaaGACGAUGAGGAGGu -3'
miRNA:   3'- cUCCGG------CUCAUg-CUGCUACUCCUCUu -5'
14183 5' -55 NC_003521.1 + 87371 0.72 0.778253
Target:  5'- gGAGGCCGAGguggAgGACGAggcggcgGAGGuGAc -3'
miRNA:   3'- -CUCCGGCUCa---UgCUGCUa------CUCCuCUu -5'
14183 5' -55 NC_003521.1 + 47834 0.7 0.833854
Target:  5'- aGAGGCUGAGUAUGACGAgcgugcccgccgugGccGAGAAc -3'
miRNA:   3'- -CUCCGGCUCAUGCUGCUa-------------CucCUCUU- -5'
14183 5' -55 NC_003521.1 + 154687 0.69 0.876623
Target:  5'- gGAGGCuaccgCGuGUGCGACGcgcgcGAGGAGAAc -3'
miRNA:   3'- -CUCCG-----GCuCAUGCUGCua---CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 66883 0.69 0.883589
Target:  5'- -uGGCCGAGaccagugACGAggaggcaGAUGAGGGGGAg -3'
miRNA:   3'- cuCCGGCUCa------UGCUg------CUACUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 111371 0.69 0.896869
Target:  5'- cGGcGCCGGGacuaGCGGCGAcgGAGGGGAc -3'
miRNA:   3'- cUC-CGGCUCa---UGCUGCUa-CUCCUCUu -5'
14183 5' -55 NC_003521.1 + 209555 0.69 0.903176
Target:  5'- -cGGCgGGGUggcgGCGACGGUGGcGGGGGu -3'
miRNA:   3'- cuCCGgCUCA----UGCUGCUACU-CCUCUu -5'
14183 5' -55 NC_003521.1 + 113363 0.68 0.909256
Target:  5'- cGGGCCGGG---GGCGAgGAGGAGGGu -3'
miRNA:   3'- cUCCGGCUCaugCUGCUaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 151252 0.68 0.915107
Target:  5'- -cGGCCuGGGacgGCGACGAcGAGGAGc- -3'
miRNA:   3'- cuCCGG-CUCa--UGCUGCUaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 7974 0.68 0.915107
Target:  5'- -cGGCCGGGaggguccGCGGCGGcgGGGGAGGu -3'
miRNA:   3'- cuCCGGCUCa------UGCUGCUa-CUCCUCUu -5'
14183 5' -55 NC_003521.1 + 19042 0.68 0.920728
Target:  5'- --cGCCGAGgaaGACGAUGAaacGGAGAu -3'
miRNA:   3'- cucCGGCUCaugCUGCUACU---CCUCUu -5'
14183 5' -55 NC_003521.1 + 38232 0.68 0.925589
Target:  5'- aGGGGCCGAGgagagcauugACGcCGGUGAucucagcGGAGAc -3'
miRNA:   3'- -CUCCGGCUCa---------UGCuGCUACU-------CCUCUu -5'
14183 5' -55 NC_003521.1 + 130864 0.68 0.926117
Target:  5'- cGAGGaCGAugACGAgGAUGAGGAGu- -3'
miRNA:   3'- -CUCCgGCUcaUGCUgCUACUCCUCuu -5'
14183 5' -55 NC_003521.1 + 43603 0.68 0.926117
Target:  5'- cGAGGacgaCGAGcGCGACGAcaacgaggacGAGGAGGAg -3'
miRNA:   3'- -CUCCg---GCUCaUGCUGCUa---------CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 19703 0.68 0.926117
Target:  5'- cAGGCCGGGacaAgGGCGAUGAGaAGAGu -3'
miRNA:   3'- cUCCGGCUCa--UgCUGCUACUCcUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.