miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 91353 0.66 0.970447
Target:  5'- -uGGUCGGG-AgGACGGUGgGGGAGGGg -3'
miRNA:   3'- cuCCGGCUCaUgCUGCUAC-UCCUCUU- -5'
14183 5' -55 NC_003521.1 + 43603 0.68 0.926117
Target:  5'- cGAGGacgaCGAGcGCGACGAcaacgaggacGAGGAGGAg -3'
miRNA:   3'- -CUCCg---GCUCaUGCUGCUa---------CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 130864 0.68 0.926117
Target:  5'- cGAGGaCGAugACGAgGAUGAGGAGu- -3'
miRNA:   3'- -CUCCgGCUcaUGCUgCUACUCCUCuu -5'
14183 5' -55 NC_003521.1 + 148890 0.68 0.936201
Target:  5'- -cGGCCGuGgcCGACGccGAGGAGc- -3'
miRNA:   3'- cuCCGGCuCauGCUGCuaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 146649 0.68 0.936201
Target:  5'- -cGGCCacg-ACGACGgcGAGGAGGAc -3'
miRNA:   3'- cuCCGGcucaUGCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 140767 0.67 0.945361
Target:  5'- -cGuGCCGGGcgaugACGACGAagaagGAGGAGGGg -3'
miRNA:   3'- cuC-CGGCUCa----UGCUGCUa----CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 4239 0.67 0.957406
Target:  5'- gGAGGaCCGAG-ACGGgGAgGAGGAcGAGa -3'
miRNA:   3'- -CUCC-GGCUCaUGCUgCUaCUCCU-CUU- -5'
14183 5' -55 NC_003521.1 + 172870 0.66 0.96098
Target:  5'- uGAGGCCGAGcUGCag----GAGGAGGAa -3'
miRNA:   3'- -CUCCGGCUC-AUGcugcuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 98823 0.66 0.967496
Target:  5'- -cGGCCGGGaucugaggugACGGCGAgGAGGuGAu -3'
miRNA:   3'- cuCCGGCUCa---------UGCUGCUaCUCCuCUu -5'
14183 5' -55 NC_003521.1 + 19703 0.68 0.926117
Target:  5'- cAGGCCGGGacaAgGGCGAUGAGaAGAGu -3'
miRNA:   3'- cUCCGGCUCa--UgCUGCUACUCcUCUU- -5'
14183 5' -55 NC_003521.1 + 19438 0.68 0.926117
Target:  5'- cAGGaCCGGGaa-GACGAaGAGGAGGAc -3'
miRNA:   3'- cUCC-GGCUCaugCUGCUaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 38232 0.68 0.925589
Target:  5'- aGGGGCCGAGgagagcauugACGcCGGUGAucucagcGGAGAc -3'
miRNA:   3'- -CUCCGGCUCa---------UGCuGCUACU-------CCUCUu -5'
14183 5' -55 NC_003521.1 + 216039 0.72 0.75027
Target:  5'- aGGGCCagucgcGGGUAaaGACGAUGAGGAGGu -3'
miRNA:   3'- cUCCGG------CUCAUg-CUGCUACUCCUCUu -5'
14183 5' -55 NC_003521.1 + 87371 0.72 0.778253
Target:  5'- gGAGGCCGAGguggAgGACGAggcggcgGAGGuGAc -3'
miRNA:   3'- -CUCCGGCUCa---UgCUGCUa------CUCCuCUu -5'
14183 5' -55 NC_003521.1 + 47834 0.7 0.833854
Target:  5'- aGAGGCUGAGUAUGACGAgcgugcccgccgugGccGAGAAc -3'
miRNA:   3'- -CUCCGGCUCAUGCUGCUa-------------CucCUCUU- -5'
14183 5' -55 NC_003521.1 + 154687 0.69 0.876623
Target:  5'- gGAGGCuaccgCGuGUGCGACGcgcgcGAGGAGAAc -3'
miRNA:   3'- -CUCCG-----GCuCAUGCUGCua---CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 111371 0.69 0.896869
Target:  5'- cGGcGCCGGGacuaGCGGCGAcgGAGGGGAc -3'
miRNA:   3'- cUC-CGGCUCa---UGCUGCUa-CUCCUCUu -5'
14183 5' -55 NC_003521.1 + 209555 0.69 0.903176
Target:  5'- -cGGCgGGGUggcgGCGACGGUGGcGGGGGu -3'
miRNA:   3'- cuCCGgCUCA----UGCUGCUACU-CCUCUu -5'
14183 5' -55 NC_003521.1 + 113363 0.68 0.909256
Target:  5'- cGGGCCGGG---GGCGAgGAGGAGGGu -3'
miRNA:   3'- cUCCGGCUCaugCUGCUaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 151252 0.68 0.915107
Target:  5'- -cGGCCuGGGacgGCGACGAcGAGGAGc- -3'
miRNA:   3'- cuCCGG-CUCa--UGCUGCUaCUCCUCuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.