miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 80952 0.92 0.065868
Target:  5'- gGAGGCCGAugACGACGAUGAGGAGAAg -3'
miRNA:   3'- -CUCCGGCUcaUGCUGCUACUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 13639 0.66 0.96098
Target:  5'- uGGGCUGGGaaggGCGGCGGaGgcGGGAGAAg -3'
miRNA:   3'- cUCCGGCUCa---UGCUGCUaC--UCCUCUU- -5'
14183 5' -55 NC_003521.1 + 36302 0.66 0.965628
Target:  5'- cGAGGCCGGGUGgGGCGcAcccucagucggggcgUGGGGAc-- -3'
miRNA:   3'- -CUCCGGCUCAUgCUGC-U---------------ACUCCUcuu -5'
14183 5' -55 NC_003521.1 + 40974 0.65 0.975764
Target:  5'- cGGGCCccGGGgg-GACGcgGAGGAGGGg -3'
miRNA:   3'- cUCCGG--CUCaugCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 66883 0.69 0.883589
Target:  5'- -uGGCCGAGaccagugACGAggaggcaGAUGAGGGGGAg -3'
miRNA:   3'- cuCCGGCUCa------UGCUg------CUACUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 7974 0.68 0.915107
Target:  5'- -cGGCCGGGaggguccGCGGCGGcgGGGGAGGu -3'
miRNA:   3'- cuCCGGCUCa------UGCUGCUa-CUCCUCUu -5'
14183 5' -55 NC_003521.1 + 37409 0.68 0.926117
Target:  5'- cGGGCCuuGUGCGACGGccUG-GGAGGc -3'
miRNA:   3'- cUCCGGcuCAUGCUGCU--ACuCCUCUu -5'
14183 5' -55 NC_003521.1 + 119978 0.68 0.926117
Target:  5'- aAGGCCGAGUccagcAUGGCacccGAGGAGGAu -3'
miRNA:   3'- cUCCGGCUCA-----UGCUGcua-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 18979 0.68 0.936201
Target:  5'- gGGGGUCGAGgacgcgccgcGCGACGA--GGGAGAc -3'
miRNA:   3'- -CUCCGGCUCa---------UGCUGCUacUCCUCUu -5'
14183 5' -55 NC_003521.1 + 221344 0.67 0.9496
Target:  5'- aAGGCUGccgcuuUGCGGCGGUaGAGGAGGGg -3'
miRNA:   3'- cUCCGGCuc----AUGCUGCUA-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 116955 0.67 0.945361
Target:  5'- cGAGGa-GAGaACGGCGGgaaacGAGGAGAAg -3'
miRNA:   3'- -CUCCggCUCaUGCUGCUa----CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 123560 0.68 0.931275
Target:  5'- -cGGCCGAcgACGGCGGUGGcGGGAu -3'
miRNA:   3'- cuCCGGCUcaUGCUGCUACUcCUCUu -5'
14183 5' -55 NC_003521.1 + 172431 0.77 0.503125
Target:  5'- cGAGGCgGAGgaggaagACGACGAggaGAGGGGAGg -3'
miRNA:   3'- -CUCCGgCUCa------UGCUGCUa--CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 172324 0.67 0.945361
Target:  5'- cAGGCCGGucGCGGCGGacgggUGAGGGGc- -3'
miRNA:   3'- cUCCGGCUcaUGCUGCU-----ACUCCUCuu -5'
14183 5' -55 NC_003521.1 + 90873 0.76 0.551613
Target:  5'- -cGGCCGAGgGgGACGggGAGGGGGAc -3'
miRNA:   3'- cuCCGGCUCaUgCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 100572 0.68 0.931275
Target:  5'- aGGGCaCGAGgaggACGACGAcGcGGAGGGa -3'
miRNA:   3'- cUCCG-GCUCa---UGCUGCUaCuCCUCUU- -5'
14183 5' -55 NC_003521.1 + 159648 0.67 0.948352
Target:  5'- cGAGGCCuGGUGCGugGAccaacggcgcacccUGAGGucuucaAGGAg -3'
miRNA:   3'- -CUCCGGcUCAUGCugCU--------------ACUCC------UCUU- -5'
14183 5' -55 NC_003521.1 + 163977 0.66 0.964342
Target:  5'- cGAGGaCGAGgACGcGCGGgaaGAGGAGGAa -3'
miRNA:   3'- -CUCCgGCUCaUGC-UGCUa--CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 35799 0.72 0.731096
Target:  5'- aAGGCCGAcUACGGCGGcgUGGGcGAGAAc -3'
miRNA:   3'- cUCCGGCUcAUGCUGCU--ACUC-CUCUU- -5'
14183 5' -55 NC_003521.1 + 19042 0.68 0.920728
Target:  5'- --cGCCGAGgaaGACGAUGAaacGGAGAu -3'
miRNA:   3'- cucCGGCUCaugCUGCUACU---CCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.