miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 43603 0.68 0.926117
Target:  5'- cGAGGacgaCGAGcGCGACGAcaacgaggacGAGGAGGAg -3'
miRNA:   3'- -CUCCg---GCUCaUGCUGCUa---------CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 19703 0.68 0.926117
Target:  5'- cAGGCCGGGacaAgGGCGAUGAGaAGAGu -3'
miRNA:   3'- cUCCGGCUCa--UgCUGCUACUCcUCUU- -5'
14183 5' -55 NC_003521.1 + 19438 0.68 0.926117
Target:  5'- cAGGaCCGGGaa-GACGAaGAGGAGGAc -3'
miRNA:   3'- cUCC-GGCUCaugCUGCUaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 100572 0.68 0.931275
Target:  5'- aGGGCaCGAGgaggACGACGAcGcGGAGGGa -3'
miRNA:   3'- cUCCG-GCUCa---UGCUGCUaCuCCUCUU- -5'
14183 5' -55 NC_003521.1 + 123560 0.68 0.931275
Target:  5'- -cGGCCGAcgACGGCGGUGGcGGGAu -3'
miRNA:   3'- cuCCGGCUcaUGCUGCUACUcCUCUu -5'
14183 5' -55 NC_003521.1 + 229245 0.68 0.936201
Target:  5'- cGGGCCGcggaGGUGCuuGCGGUGAGG-GAAg -3'
miRNA:   3'- cUCCGGC----UCAUGc-UGCUACUCCuCUU- -5'
14183 5' -55 NC_003521.1 + 18979 0.68 0.936201
Target:  5'- gGGGGUCGAGgacgcgccgcGCGACGA--GGGAGAc -3'
miRNA:   3'- -CUCCGGCUCa---------UGCUGCUacUCCUCUu -5'
14183 5' -55 NC_003521.1 + 146649 0.68 0.936201
Target:  5'- -cGGCCacg-ACGACGgcGAGGAGGAc -3'
miRNA:   3'- cuCCGGcucaUGCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 148890 0.68 0.936201
Target:  5'- -cGGCCGuGgcCGACGccGAGGAGc- -3'
miRNA:   3'- cuCCGGCuCauGCUGCuaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 140767 0.67 0.945361
Target:  5'- -cGuGCCGGGcgaugACGACGAagaagGAGGAGGGg -3'
miRNA:   3'- cuC-CGGCUCa----UGCUGCUa----CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 172324 0.67 0.945361
Target:  5'- cAGGCCGGucGCGGCGGacgggUGAGGGGc- -3'
miRNA:   3'- cUCCGGCUcaUGCUGCU-----ACUCCUCuu -5'
14183 5' -55 NC_003521.1 + 116955 0.67 0.945361
Target:  5'- cGAGGa-GAGaACGGCGGgaaacGAGGAGAAg -3'
miRNA:   3'- -CUCCggCUCaUGCUGCUa----CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 159648 0.67 0.948352
Target:  5'- cGAGGCCuGGUGCGugGAccaacggcgcacccUGAGGucuucaAGGAg -3'
miRNA:   3'- -CUCCGGcUCAUGCugCU--------------ACUCC------UCUU- -5'
14183 5' -55 NC_003521.1 + 221344 0.67 0.9496
Target:  5'- aAGGCUGccgcuuUGCGGCGGUaGAGGAGGGg -3'
miRNA:   3'- cUCCGGCuc----AUGCUGCUA-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 4239 0.67 0.957406
Target:  5'- gGAGGaCCGAG-ACGGgGAgGAGGAcGAGa -3'
miRNA:   3'- -CUCC-GGCUCaUGCUgCUaCUCCU-CUU- -5'
14183 5' -55 NC_003521.1 + 13639 0.66 0.96098
Target:  5'- uGGGCUGGGaaggGCGGCGGaGgcGGGAGAAg -3'
miRNA:   3'- cUCCGGCUCa---UGCUGCUaC--UCCUCUU- -5'
14183 5' -55 NC_003521.1 + 172870 0.66 0.96098
Target:  5'- uGAGGCCGAGcUGCag----GAGGAGGAa -3'
miRNA:   3'- -CUCCGGCUC-AUGcugcuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 163977 0.66 0.964342
Target:  5'- cGAGGaCGAGgACGcGCGGgaaGAGGAGGAa -3'
miRNA:   3'- -CUCCgGCUCaUGC-UGCUa--CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 36302 0.66 0.965628
Target:  5'- cGAGGCCGGGUGgGGCGcAcccucagucggggcgUGGGGAc-- -3'
miRNA:   3'- -CUCCGGCUCAUgCUGC-U---------------ACUCCUcuu -5'
14183 5' -55 NC_003521.1 + 98823 0.66 0.967496
Target:  5'- -cGGCCGGGaucugaggugACGGCGAgGAGGuGAu -3'
miRNA:   3'- cuCCGGCUCa---------UGCUGCUaCUCCuCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.