miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 5' -55 NC_003521.1 + 229245 0.68 0.936201
Target:  5'- cGGGCCGcggaGGUGCuuGCGGUGAGG-GAAg -3'
miRNA:   3'- cUCCGGC----UCAUGc-UGCUACUCCuCUU- -5'
14183 5' -55 NC_003521.1 + 224144 0.66 0.9732
Target:  5'- uGGGCCGAGU-CGGgccaGGUcAGGAGGAg -3'
miRNA:   3'- cUCCGGCUCAuGCUg---CUAcUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 221344 0.67 0.9496
Target:  5'- aAGGCUGccgcuuUGCGGCGGUaGAGGAGGGg -3'
miRNA:   3'- cUCCGGCuc----AUGCUGCUA-CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 216039 0.72 0.75027
Target:  5'- aGGGCCagucgcGGGUAaaGACGAUGAGGAGGu -3'
miRNA:   3'- cUCCGG------CUCAUg-CUGCUACUCCUCUu -5'
14183 5' -55 NC_003521.1 + 209555 0.69 0.903176
Target:  5'- -cGGCgGGGUggcgGCGACGGUGGcGGGGGu -3'
miRNA:   3'- cuCCGgCUCA----UGCUGCUACU-CCUCUu -5'
14183 5' -55 NC_003521.1 + 195359 0.66 0.967496
Target:  5'- uGGGCCGGGUGaaggUGACGcccGAGGAcGAGg -3'
miRNA:   3'- cUCCGGCUCAU----GCUGCua-CUCCU-CUU- -5'
14183 5' -55 NC_003521.1 + 189097 0.66 0.9732
Target:  5'- uGAGcaCCGAGUcgGACGAcGAGGAGAc -3'
miRNA:   3'- -CUCc-GGCUCAugCUGCUaCUCCUCUu -5'
14183 5' -55 NC_003521.1 + 172870 0.66 0.96098
Target:  5'- uGAGGCCGAGcUGCag----GAGGAGGAa -3'
miRNA:   3'- -CUCCGGCUC-AUGcugcuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 172431 0.77 0.503125
Target:  5'- cGAGGCgGAGgaggaagACGACGAggaGAGGGGAGg -3'
miRNA:   3'- -CUCCGgCUCa------UGCUGCUa--CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 172324 0.67 0.945361
Target:  5'- cAGGCCGGucGCGGCGGacgggUGAGGGGc- -3'
miRNA:   3'- cUCCGGCUcaUGCUGCU-----ACUCCUCuu -5'
14183 5' -55 NC_003521.1 + 164901 0.66 0.9732
Target:  5'- --cGCCGuGaugacgACGACGAUGAGGAuGAc -3'
miRNA:   3'- cucCGGCuCa-----UGCUGCUACUCCU-CUu -5'
14183 5' -55 NC_003521.1 + 163977 0.66 0.964342
Target:  5'- cGAGGaCGAGgACGcGCGGgaaGAGGAGGAa -3'
miRNA:   3'- -CUCCgGCUCaUGC-UGCUa--CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 159648 0.67 0.948352
Target:  5'- cGAGGCCuGGUGCGugGAccaacggcgcacccUGAGGucuucaAGGAg -3'
miRNA:   3'- -CUCCGGcUCAUGCugCU--------------ACUCC------UCUU- -5'
14183 5' -55 NC_003521.1 + 156964 0.66 0.9732
Target:  5'- uGGGUCGAGgACGGag--GAGGAGGAg -3'
miRNA:   3'- cUCCGGCUCaUGCUgcuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 154687 0.69 0.876623
Target:  5'- gGAGGCuaccgCGuGUGCGACGcgcgcGAGGAGAAc -3'
miRNA:   3'- -CUCCG-----GCuCAUGCUGCua---CUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 151252 0.68 0.915107
Target:  5'- -cGGCCuGGGacgGCGACGAcGAGGAGc- -3'
miRNA:   3'- cuCCGG-CUCa--UGCUGCUaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 148890 0.68 0.936201
Target:  5'- -cGGCCGuGgcCGACGccGAGGAGc- -3'
miRNA:   3'- cuCCGGCuCauGCUGCuaCUCCUCuu -5'
14183 5' -55 NC_003521.1 + 146649 0.68 0.936201
Target:  5'- -cGGCCacg-ACGACGgcGAGGAGGAc -3'
miRNA:   3'- cuCCGGcucaUGCUGCuaCUCCUCUU- -5'
14183 5' -55 NC_003521.1 + 142272 0.66 0.967496
Target:  5'- --cGCCGGagACGACGAUGGcucGGAGGAa -3'
miRNA:   3'- cucCGGCUcaUGCUGCUACU---CCUCUU- -5'
14183 5' -55 NC_003521.1 + 140767 0.67 0.945361
Target:  5'- -cGuGCCGGGcgaugACGACGAagaagGAGGAGGGg -3'
miRNA:   3'- cuC-CGGCUCa----UGCUGCUa----CUCCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.