miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 107790 0.66 0.906167
Target:  5'- aCUGUGGUGGggGCUGCugauacugugccgguGGCGGcUGUc -3'
miRNA:   3'- cGGCGCUACCuuCGGCG---------------CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 215444 0.66 0.895327
Target:  5'- aGCCGCGGgugcUGGcgccAGGCCGagggagccacgaaGGCGAagGCc -3'
miRNA:   3'- -CGGCGCU----ACC----UUCGGCg------------CCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 83749 0.66 0.897794
Target:  5'- aCCGCG--GGggGCCugggacaggGUGGCGG-CGCc -3'
miRNA:   3'- cGGCGCuaCCuuCGG---------CGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 134532 0.66 0.909631
Target:  5'- cGCCGCc-UGGuuGCUGUugcccuccacGGCGAUgCGCa -3'
miRNA:   3'- -CGGCGcuACCuuCGGCG----------CCGCUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 214987 0.66 0.903817
Target:  5'- gGCCaggGgGGUGcGAGCCaGCGGCGucUCGUa -3'
miRNA:   3'- -CGG---CgCUACcUUCGG-CGCCGCu-AGCG- -5'
14189 3' -58.5 NC_003521.1 + 240113 0.66 0.920626
Target:  5'- cGuuGgGGUGGGcgugcGGUCGUcccGGCGggCGCg -3'
miRNA:   3'- -CggCgCUACCU-----UCGGCG---CCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 13208 0.66 0.897794
Target:  5'- cGCCGUGuUGGAgGGCCGacCGGCGcccaaGCc -3'
miRNA:   3'- -CGGCGCuACCU-UCGGC--GCCGCuag--CG- -5'
14189 3' -58.5 NC_003521.1 + 43480 0.66 0.915234
Target:  5'- cGCgGCGGccgUGcuGGCCGCGGCGGccaacauccgUCaGCg -3'
miRNA:   3'- -CGgCGCU---ACcuUCGGCGCCGCU----------AG-CG- -5'
14189 3' -58.5 NC_003521.1 + 184922 0.66 0.915234
Target:  5'- cGCCGCcGUcGGAGGgU-CGGCGAcCGCg -3'
miRNA:   3'- -CGGCGcUA-CCUUCgGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 214161 0.66 0.920626
Target:  5'- aGCCGCgGAUGGcuuGGUCGaCGGgcaguuCGGUgGCa -3'
miRNA:   3'- -CGGCG-CUACCu--UCGGC-GCC------GCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 145579 0.66 0.915234
Target:  5'- uGCUGCGgcGGcAcgacgcggcGGCCGUGGCc-UCGCu -3'
miRNA:   3'- -CGGCGCuaCC-U---------UCGGCGCCGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 211686 0.66 0.906167
Target:  5'- uGCCGCGGaGGAuccacagggccuccaGcuugccGCCGUGGCGGaucaCGCa -3'
miRNA:   3'- -CGGCGCUaCCU---------------U------CGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 125835 0.66 0.909631
Target:  5'- -gCGCGuc--GGGCuCGCGGUGGUCGUa -3'
miRNA:   3'- cgGCGCuaccUUCG-GCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 150510 0.66 0.910201
Target:  5'- cGCCgGCGGggcccugcuaggagcGGGAGCCGUGG-GGUCcgGCg -3'
miRNA:   3'- -CGG-CGCUa--------------CCUUCGGCGCCgCUAG--CG- -5'
14189 3' -58.5 NC_003521.1 + 170867 0.66 0.897794
Target:  5'- uCCGCGggGGcGGgCGCGgGUGGUCagGCg -3'
miRNA:   3'- cGGCGCuaCCuUCgGCGC-CGCUAG--CG- -5'
14189 3' -58.5 NC_003521.1 + 47635 0.66 0.897794
Target:  5'- gGCCGUGAcGGcGGCUcugGCGGCagcugCGCa -3'
miRNA:   3'- -CGGCGCUaCCuUCGG---CGCCGcua--GCG- -5'
14189 3' -58.5 NC_003521.1 + 90572 0.66 0.897794
Target:  5'- gGCCGCGGUGcAGGCCGaC-GUGA-CGUg -3'
miRNA:   3'- -CGGCGCUACcUUCGGC-GcCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 84074 0.66 0.903817
Target:  5'- gGCUcuugGCGAUGGucauGGCCGUGcGCGAggUCa- -3'
miRNA:   3'- -CGG----CGCUACCu---UCGGCGC-CGCU--AGcg -5'
14189 3' -58.5 NC_003521.1 + 18781 0.66 0.903817
Target:  5'- cGCagGCGGUGGAgGGCCaGCGcuGCuuUCGCg -3'
miRNA:   3'- -CGg-CGCUACCU-UCGG-CGC--CGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 165012 0.66 0.895947
Target:  5'- gGCCGCaagGAcagguuccucagcaUGGugcuGCCGCGGCG-UCuGCa -3'
miRNA:   3'- -CGGCG---CU--------------ACCuu--CGGCGCCGCuAG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.