Results 21 - 40 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14189 | 3' | -58.5 | NC_003521.1 | + | 214987 | 0.66 | 0.903817 |
Target: 5'- gGCCaggGgGGUGcGAGCCaGCGGCGucUCGUa -3' miRNA: 3'- -CGG---CgCUACcUUCGG-CGCCGCu-AGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 125835 | 0.66 | 0.909631 |
Target: 5'- -gCGCGuc--GGGCuCGCGGUGGUCGUa -3' miRNA: 3'- cgGCGCuaccUUCG-GCGCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 98738 | 0.66 | 0.897794 |
Target: 5'- uGCCGCGggGGuGGUCGUcGUaGUCGUa -3' miRNA: 3'- -CGGCGCuaCCuUCGGCGcCGcUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 43099 | 0.66 | 0.903817 |
Target: 5'- cGCgCGCGAc-GAGcugaccaagcGCUGCGGCGAgCGCu -3' miRNA: 3'- -CG-GCGCUacCUU----------CGGCGCCGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 59595 | 0.66 | 0.914683 |
Target: 5'- cGCCaaGAaGGAcgguaguggcggcGGCCccgGCGGCGAcCGCg -3' miRNA: 3'- -CGGcgCUaCCU-------------UCGG---CGCCGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 193315 | 0.66 | 0.903817 |
Target: 5'- --gGUGGUGGGcacGGUgGgGGUGGUCGCc -3' miRNA: 3'- cggCGCUACCU---UCGgCgCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 137282 | 0.66 | 0.915234 |
Target: 5'- gGCCccaGCGAccUGG-AGCUGCGGgUGG-CGCg -3' miRNA: 3'- -CGG---CGCU--ACCuUCGGCGCC-GCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 134532 | 0.66 | 0.909631 |
Target: 5'- cGCCGCc-UGGuuGCUGUugcccuccacGGCGAUgCGCa -3' miRNA: 3'- -CGGCGcuACCuuCGGCG----------CCGCUA-GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 145579 | 0.66 | 0.915234 |
Target: 5'- uGCUGCGgcGGcAcgacgcggcGGCCGUGGCc-UCGCu -3' miRNA: 3'- -CGGCGCuaCC-U---------UCGGCGCCGcuAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 224198 | 0.66 | 0.920626 |
Target: 5'- cGCCGCGAca-GAGCCaGCGGUacuGAcgcccguagUCGCg -3' miRNA: 3'- -CGGCGCUaccUUCGG-CGCCG---CU---------AGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 211686 | 0.66 | 0.906167 |
Target: 5'- uGCCGCGGaGGAuccacagggccuccaGcuugccGCCGUGGCGGaucaCGCa -3' miRNA: 3'- -CGGCGCUaCCU---------------U------CGGCGCCGCUa---GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 125318 | 0.66 | 0.903817 |
Target: 5'- cGCgGCGGUGGGuccGGCCacagagcgacacGCGGCccaCGCu -3' miRNA: 3'- -CGgCGCUACCU---UCGG------------CGCCGcuaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 224697 | 0.66 | 0.897794 |
Target: 5'- cGCCcggGCGuGUGGAAGuucacgucccgcCCGUGGUGcUCGCc -3' miRNA: 3'- -CGG---CGC-UACCUUC------------GGCGCCGCuAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 133209 | 0.66 | 0.897794 |
Target: 5'- aCCGCGGUcGggGCgcggguucaGgGGCGAUgGCg -3' miRNA: 3'- cGGCGCUAcCuuCGg--------CgCCGCUAgCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 168553 | 0.66 | 0.909631 |
Target: 5'- gGCgGCGcUGGcGGGCUGCGGguaaGGUgGCg -3' miRNA: 3'- -CGgCGCuACC-UUCGGCGCCg---CUAgCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 120934 | 0.66 | 0.903817 |
Target: 5'- cCCGCGgcGGcGGCUcCGGCGAgggGCa -3' miRNA: 3'- cGGCGCuaCCuUCGGcGCCGCUag-CG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 203829 | 0.66 | 0.897794 |
Target: 5'- cGCCGCGAcgcccucGUCGCGGauGUCGCc -3' miRNA: 3'- -CGGCGCUaccuu--CGGCGCCgcUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 30250 | 0.66 | 0.903817 |
Target: 5'- uCCGCGc-GGuuGCCGUGGCGca-GCu -3' miRNA: 3'- cGGCGCuaCCuuCGGCGCCGCuagCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 113577 | 0.66 | 0.900228 |
Target: 5'- -aCGCGGUGGGgcugGGCCucgggggcaacggggGCGGCGcUCuGCu -3' miRNA: 3'- cgGCGCUACCU----UCGG---------------CGCCGCuAG-CG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 113365 | 0.66 | 0.909059 |
Target: 5'- gGCCggggGCGAggaGGAGgguuacggcggacGCCGCGgGCGGgugCGCa -3' miRNA: 3'- -CGG----CGCUa--CCUU-------------CGGCGC-CGCUa--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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