miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 186628 0.76 0.419061
Target:  5'- gGCgGCGGUGGuGGCggcaagucgacgucgCGCGGCGGUgGCg -3'
miRNA:   3'- -CGgCGCUACCuUCG---------------GCGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 40412 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 98977 0.76 0.424055
Target:  5'- gGCgGUGccGGGAGCCGUaGGCGcGUCGCa -3'
miRNA:   3'- -CGgCGCuaCCUUCGGCG-CCGC-UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 167163 0.76 0.424055
Target:  5'- cGCCucggGCGucuUGGAggcGGCCGCGGCGGagGCc -3'
miRNA:   3'- -CGG----CGCu--ACCU---UCGGCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 240639 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 90 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 88052 0.76 0.424055
Target:  5'- aGCgCGCGGauGAGGUCGCGGUGGUCGg -3'
miRNA:   3'- -CG-GCGCUacCUUCGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 13928 0.75 0.440951
Target:  5'- gGCCGCGcUGGccGCCGUGGUGccccCGCa -3'
miRNA:   3'- -CGGCGCuACCuuCGGCGCCGCua--GCG- -5'
14189 3' -58.5 NC_003521.1 + 198840 0.75 0.440951
Target:  5'- uGCUGCGAccuuaaGAAGgCGCGGCGGUCGa -3'
miRNA:   3'- -CGGCGCUac----CUUCgGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 14191 0.75 0.440951
Target:  5'- gGCCGCGAgcaagcUGGuguGCUGCGGCGAgccccugaCGCc -3'
miRNA:   3'- -CGGCGCU------ACCuu-CGGCGCCGCUa-------GCG- -5'
14189 3' -58.5 NC_003521.1 + 165020 0.75 0.449542
Target:  5'- gGCCGCGAUc---GCCGCGGCuuccAUCGCg -3'
miRNA:   3'- -CGGCGCUAccuuCGGCGCCGc---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 49575 0.75 0.466995
Target:  5'- uGCCGCG-UGG--GCCGCGGCGc-CGCc -3'
miRNA:   3'- -CGGCGCuACCuuCGGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 70128 0.75 0.466995
Target:  5'- gGCCGCuaucagGGccucGAGCUGCGGCGAgCGCg -3'
miRNA:   3'- -CGGCGcua---CC----UUCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 161107 0.75 0.470527
Target:  5'- gGCgGCGGUGGuuuagucgggaAuugcaggaucaacgcGGCCGCgGGCGGUCGCg -3'
miRNA:   3'- -CGgCGCUACC-----------U---------------UCGGCG-CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 234734 0.75 0.475851
Target:  5'- aGCCGUGgcGGAAcGCCGCcgcaccGGCcGUCGCa -3'
miRNA:   3'- -CGGCGCuaCCUU-CGGCG------CCGcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 168408 0.75 0.479417
Target:  5'- cGCCGuUGGUGGcuagggcgggcggcaGGGCCGCGGCGGcgggCGUg -3'
miRNA:   3'- -CGGC-GCUACC---------------UUCGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 116872 0.74 0.493809
Target:  5'- uGCgCGCGcaGUGGcgcGGCUGCGGCGG-CGCg -3'
miRNA:   3'- -CG-GCGC--UACCu--UCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 97268 0.74 0.500168
Target:  5'- cGCCaGCGAUGGcGGCUgcugcucgucgccgGCGGCGcgCGUg -3'
miRNA:   3'- -CGG-CGCUACCuUCGG--------------CGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 7961 0.74 0.512071
Target:  5'- cGCCGCGGUgucgcggccgGGAGGguCCGCGGCGG-CGg -3'
miRNA:   3'- -CGGCGCUA----------CCUUC--GGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 195348 0.74 0.512071
Target:  5'- uGCCGUGGUGGuGGGCCG-GGUGAagGUg -3'
miRNA:   3'- -CGGCGCUACC-UUCGGCgCCGCUagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.