miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 75798 1.13 0.001656
Target:  5'- gGCCGCGAUGGAAGCCGCGGCGAUCGCg -3'
miRNA:   3'- -CGGCGCUACCUUCGGCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 125408 0.82 0.188324
Target:  5'- cGCCGCGGcgcugaguccGGAGGCCGUGGCGGcCGCc -3'
miRNA:   3'- -CGGCGCUa---------CCUUCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 50507 0.81 0.216239
Target:  5'- gGCgGCGGUGGAgaugguaccaaugGGCCGCGGgGuUCGCg -3'
miRNA:   3'- -CGgCGCUACCU-------------UCGGCGCCgCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 91907 0.81 0.227
Target:  5'- cGCUGCGGUGcucGAuGCCGCGGCGG-CGCu -3'
miRNA:   3'- -CGGCGCUAC---CUuCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 145897 0.8 0.232282
Target:  5'- cGCCgGCGgcGGGAGCaGCGGCGGuUCGCa -3'
miRNA:   3'- -CGG-CGCuaCCUUCGgCGCCGCU-AGCG- -5'
14189 3' -58.5 NC_003521.1 + 236469 0.8 0.24875
Target:  5'- gGCCGCGAUGagcGAAccGCCgGCGGCGGUgGCg -3'
miRNA:   3'- -CGGCGCUAC---CUU--CGG-CGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 186927 0.8 0.25445
Target:  5'- cGCCgGUGgcGGggGCgGCGGCGAaCGCa -3'
miRNA:   3'- -CGG-CGCuaCCuuCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 228242 0.8 0.260257
Target:  5'- gGUCGUGGUGGGugccGCCGUGGUGGUCGg -3'
miRNA:   3'- -CGGCGCUACCUu---CGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 186781 0.8 0.260257
Target:  5'- gGCgGCGGUGGuGGCgGCGGCGGggGCa -3'
miRNA:   3'- -CGgCGCUACCuUCGgCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 77706 0.79 0.266172
Target:  5'- uGCC-CGA-GGAGGCgGCGGUGGUCGUg -3'
miRNA:   3'- -CGGcGCUaCCUUCGgCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 116384 0.78 0.309292
Target:  5'- uGCCGCGcgacgugGUGGAacguugguuggguAGCgGCGGCGAUgGCa -3'
miRNA:   3'- -CGGCGC-------UACCU-------------UCGgCGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 98479 0.78 0.310638
Target:  5'- gGCCGCGgcGGccGUgGCGGCGGccUCGCg -3'
miRNA:   3'- -CGGCGCuaCCuuCGgCGCCGCU--AGCG- -5'
14189 3' -58.5 NC_003521.1 + 135746 0.78 0.317433
Target:  5'- aCUGCGGUGGuGGCgGCGGUggGAUCGCc -3'
miRNA:   3'- cGGCGCUACCuUCGgCGCCG--CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 110189 0.78 0.331357
Target:  5'- gGuuGgGGUGGAGGCCGCuGGCGugCGCg -3'
miRNA:   3'- -CggCgCUACCUUCGGCG-CCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 166640 0.77 0.368103
Target:  5'- gGCCGCGcgccGGgcGCCGCGGCGca-GCg -3'
miRNA:   3'- -CGGCGCua--CCuuCGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 116466 0.77 0.37578
Target:  5'- gGCCGUGGUGGGAcacGUgGCGGCGAUgaagaGCg -3'
miRNA:   3'- -CGGCGCUACCUU---CGgCGCCGCUAg----CG- -5'
14189 3' -58.5 NC_003521.1 + 212603 0.76 0.399451
Target:  5'- cGUCaGCGAggGGAAGCUG-GGCGGUUGCg -3'
miRNA:   3'- -CGG-CGCUa-CCUUCGGCgCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 108206 0.76 0.399451
Target:  5'- cGCCGcCGAgucUGGAAGCCGuuGCGGaCGCc -3'
miRNA:   3'- -CGGC-GCU---ACCUUCGGCgcCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 135809 0.76 0.407551
Target:  5'- aGCgGCGGaGGGAGgCGCGGCGAcgaaCGCu -3'
miRNA:   3'- -CGgCGCUaCCUUCgGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 76542 0.76 0.415753
Target:  5'- uGCUGCGGUGGcuGUCcaggaGCGGCGGUcCGCg -3'
miRNA:   3'- -CGGCGCUACCuuCGG-----CGCCGCUA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.