miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 90 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 1789 0.72 0.616391
Target:  5'- cGCCGCGAccagguccGGggGUC-CGGCGAaUGCa -3'
miRNA:   3'- -CGGCGCUa-------CCuuCGGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 6618 0.73 0.577904
Target:  5'- aCCGUcuucGGAGGCCGCGcGCGAaCGCu -3'
miRNA:   3'- cGGCGcua-CCUUCGGCGC-CGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 7642 0.66 0.920626
Target:  5'- aCCGaCGGUaacGGcGGCCGCcacGGCGG-CGCg -3'
miRNA:   3'- cGGC-GCUA---CCuUCGGCG---CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 7740 0.69 0.802239
Target:  5'- cGgCGCGAgcggcGGAGGCgGCGGCaGUCccaGCa -3'
miRNA:   3'- -CgGCGCUa----CCUUCGgCGCCGcUAG---CG- -5'
14189 3' -58.5 NC_003521.1 + 7961 0.74 0.512071
Target:  5'- cGCCGCGGUgucgcggccgGGAGGguCCGCGGCGG-CGg -3'
miRNA:   3'- -CGGCGCUA----------CCUUC--GGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 12337 0.66 0.915234
Target:  5'- uGCUGCGAggcuauggugcUGGgcGUgGUGGgCGAgUCGCu -3'
miRNA:   3'- -CGGCGCU-----------ACCuuCGgCGCC-GCU-AGCG- -5'
14189 3' -58.5 NC_003521.1 + 13208 0.66 0.897794
Target:  5'- cGCCGUGuUGGAgGGCCGacCGGCGcccaaGCc -3'
miRNA:   3'- -CGGCGCuACCU-UCGGC--GCCGCuag--CG- -5'
14189 3' -58.5 NC_003521.1 + 13880 0.68 0.834758
Target:  5'- cGCCGCcAUGGAuuucGCCGgGGgGcccggCGCg -3'
miRNA:   3'- -CGGCGcUACCUu---CGGCgCCgCua---GCG- -5'
14189 3' -58.5 NC_003521.1 + 13928 0.75 0.440951
Target:  5'- gGCCGCGcUGGccGCCGUGGUGccccCGCa -3'
miRNA:   3'- -CGGCGCuACCuuCGGCGCCGCua--GCG- -5'
14189 3' -58.5 NC_003521.1 + 14191 0.75 0.440951
Target:  5'- gGCCGCGAgcaagcUGGuguGCUGCGGCGAgccccugaCGCc -3'
miRNA:   3'- -CGGCGCU------ACCuu-CGGCGCCGCUa-------GCG- -5'
14189 3' -58.5 NC_003521.1 + 14727 0.72 0.634756
Target:  5'- cGCCGUGGuaucuguUGGGcgugacgggccGGCCGCGGcCGGggCGCg -3'
miRNA:   3'- -CGGCGCU-------ACCU-----------UCGGCGCC-GCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 15200 0.68 0.847807
Target:  5'- -aCGUGGUGGAucccgacaucguggGGCUGCaGGCGGccgagCGCg -3'
miRNA:   3'- cgGCGCUACCU--------------UCGGCG-CCGCUa----GCG- -5'
14189 3' -58.5 NC_003521.1 + 16630 0.68 0.810592
Target:  5'- aCCGC--UGGcucuGUCGCGGCGAcCGCu -3'
miRNA:   3'- cGGCGcuACCuu--CGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 16989 0.68 0.808101
Target:  5'- aGCCGCag-GGAcagcaggcgcccgcGGUgGCGGCGG-CGCa -3'
miRNA:   3'- -CGGCGcuaCCU--------------UCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 17224 0.68 0.850058
Target:  5'- gGCCGaGGUcucGGAGGCCGaGGUGGaggCGCg -3'
miRNA:   3'- -CGGCgCUA---CCUUCGGCgCCGCUa--GCG- -5'
14189 3' -58.5 NC_003521.1 + 17442 0.67 0.857447
Target:  5'- cCCGCGucgGGgcGCCGCGaUG-UCGCu -3'
miRNA:   3'- cGGCGCua-CCuuCGGCGCcGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 17773 0.72 0.616391
Target:  5'- uGCUGUGAcgaugaccUGGAGGCCGuCGGCG--UGCu -3'
miRNA:   3'- -CGGCGCU--------ACCUUCGGC-GCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 18717 0.72 0.606738
Target:  5'- gGCUGUGGcUGccgcuGGCgGCGGCGAUCGUg -3'
miRNA:   3'- -CGGCGCU-ACcu---UCGgCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 18748 0.67 0.878501
Target:  5'- gGCgGCGGUGGc-GCCGaCGG--GUCGCu -3'
miRNA:   3'- -CGgCGCUACCuuCGGC-GCCgcUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.