miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 18781 0.66 0.903817
Target:  5'- cGCagGCGGUGGAgGGCCaGCGcuGCuuUCGCg -3'
miRNA:   3'- -CGg-CGCUACCU-UCGG-CGC--CGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 19441 0.66 0.909059
Target:  5'- --gGUGAgaaagggGGGAGgCGCGGCGGgaccaugUCGCu -3'
miRNA:   3'- cggCGCUa------CCUUCgGCGCCGCU-------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 19951 0.68 0.818801
Target:  5'- aUCGUGGUGaGGuGGCCgggcugGCGGUGAUCGUg -3'
miRNA:   3'- cGGCGCUAC-CU-UCGG------CGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 21291 0.68 0.850058
Target:  5'- uUCGCGGucUGGcuGCgCGUGGCGGUCa- -3'
miRNA:   3'- cGGCGCU--ACCuuCG-GCGCCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 21654 0.7 0.721772
Target:  5'- aGCCGCcacUGGAAcacGCUGCGGCGccUGCu -3'
miRNA:   3'- -CGGCGcu-ACCUU---CGGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 27459 0.66 0.909631
Target:  5'- gGCCGUGAgcgccaGGcuGGCCagguccgucauGUGGCGGUCGg -3'
miRNA:   3'- -CGGCGCUa-----CCu-UCGG-----------CGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 27753 0.68 0.834758
Target:  5'- cGCCGCGAUGucgucCCGaCGGCGcagcuccUCGCg -3'
miRNA:   3'- -CGGCGCUACcuuc-GGC-GCCGCu------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 28089 0.72 0.606738
Target:  5'- aCgGCGG-GGAAGCCGagcaGGCGcUCGCc -3'
miRNA:   3'- cGgCGCUaCCUUCGGCg---CCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 28259 0.7 0.749491
Target:  5'- cGCCGaGA-GGAacAGCgGCGGCGAUgacaGCa -3'
miRNA:   3'- -CGGCgCUaCCU--UCGgCGCCGCUAg---CG- -5'
14189 3' -58.5 NC_003521.1 + 28837 0.74 0.530606
Target:  5'- uGCgGCGccUGGAcgacgAGCUGCGGCGG-CGCg -3'
miRNA:   3'- -CGgCGCu-ACCU-----UCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 30250 0.66 0.903817
Target:  5'- uCCGCGc-GGuuGCCGUGGCGca-GCu -3'
miRNA:   3'- cGGCGCuaCCuuCGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 31720 0.69 0.767524
Target:  5'- uGCgCGUGcUGGGAcGCCGCGGCcacCGCc -3'
miRNA:   3'- -CG-GCGCuACCUU-CGGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 31898 0.67 0.857447
Target:  5'- gGCCGCGGcacaGGAA-CUGCGGCaGGcagCGCg -3'
miRNA:   3'- -CGGCGCUa---CCUUcGGCGCCG-CUa--GCG- -5'
14189 3' -58.5 NC_003521.1 + 32285 0.69 0.785127
Target:  5'- aGCCGUGAccucggccgaaUGGGccagacAGCUGCGGCGcaCGUa -3'
miRNA:   3'- -CGGCGCU-----------ACCU------UCGGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 34237 0.67 0.891565
Target:  5'- uGUCGCGAU---AGCCGgGGCcuGUCGUg -3'
miRNA:   3'- -CGGCGCUAccuUCGGCgCCGc-UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 36426 0.71 0.674301
Target:  5'- uUCGCGGUcGGAgGGCCGCGGagaCGAguugCGCu -3'
miRNA:   3'- cGGCGCUA-CCU-UCGGCGCC---GCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 36902 0.66 0.903817
Target:  5'- aGCCGUGGUGGAAGa---GGCu-UCGUg -3'
miRNA:   3'- -CGGCGCUACCUUCggcgCCGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 36996 0.69 0.785127
Target:  5'- uCCGCGAcgaGGgcGUCGCGGCGGagUCa- -3'
miRNA:   3'- cGGCGCUa--CCuuCGGCGCCGCU--AGcg -5'
14189 3' -58.5 NC_003521.1 + 37380 0.68 0.818801
Target:  5'- aCUGCGGUGuucGAGGCgGCGGgGG-CGCc -3'
miRNA:   3'- cGGCGCUAC---CUUCGgCGCCgCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 37438 0.68 0.810592
Target:  5'- gGCCGgGAccUGaGgcGaCCGCGGCGGUuucUGCg -3'
miRNA:   3'- -CGGCgCU--AC-CuuC-GGCGCCGCUA---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.