miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 72533 0.73 0.576947
Target:  5'- aGCUGC---GGAGGCgGCGGCGAcggugucgucgucUCGCg -3'
miRNA:   3'- -CGGCGcuaCCUUCGgCGCCGCU-------------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 28837 0.74 0.530606
Target:  5'- uGCgGCGccUGGAcgacgAGCUGCGGCGG-CGCg -3'
miRNA:   3'- -CGgCGCu-ACCU-----UCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 128245 0.74 0.530606
Target:  5'- gGUCGCGGUucagcaGGuAGGCCGUGGUGGgcagCGCg -3'
miRNA:   3'- -CGGCGCUA------CC-UUCGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 60691 0.74 0.530606
Target:  5'- gGCCGCGcgGGGGaCCcggggGCGGCGcggGUCGCa -3'
miRNA:   3'- -CGGCGCuaCCUUcGG-----CGCCGC---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 152356 0.73 0.539965
Target:  5'- cGCUGCucUGGGgccGGCCGgGGCGG-CGCg -3'
miRNA:   3'- -CGGCGcuACCU---UCGGCgCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 112820 0.73 0.558844
Target:  5'- gGCCGCGAccccccGGAuuCCGUGGCGggCGUc -3'
miRNA:   3'- -CGGCGCUa-----CCUucGGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 133169 0.73 0.558844
Target:  5'- aGCCGgGAcaccagcagUGGcGGCCuCGGCGAUCGg -3'
miRNA:   3'- -CGGCgCU---------ACCuUCGGcGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 169620 0.73 0.558844
Target:  5'- cGCCGUGGUGGAGguguacgguGCUGuuGUGGUCGUa -3'
miRNA:   3'- -CGGCGCUACCUU---------CGGCgcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 124419 0.73 0.574079
Target:  5'- aGCCGCGAgaucuccucguccGGcgagacgugguuGGGCCGCGGCGGcaCGCg -3'
miRNA:   3'- -CGGCGCUa------------CC------------UUCGGCGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 116872 0.74 0.493809
Target:  5'- uGCgCGCGcaGUGGcgcGGCUGCGGCGG-CGCg -3'
miRNA:   3'- -CG-GCGC--UACCu--UCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 168408 0.75 0.479417
Target:  5'- cGCCGuUGGUGGcuagggcgggcggcaGGGCCGCGGCGGcgggCGUg -3'
miRNA:   3'- -CGGC-GCUACC---------------UUCGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 70128 0.75 0.466995
Target:  5'- gGCCGCuaucagGGccucGAGCUGCGGCGAgCGCg -3'
miRNA:   3'- -CGGCGcua---CC----UUCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 116384 0.78 0.309292
Target:  5'- uGCCGCGcgacgugGUGGAacguugguuggguAGCgGCGGCGAUgGCa -3'
miRNA:   3'- -CGGCGC-------UACCU-------------UCGgCGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 116466 0.77 0.37578
Target:  5'- gGCCGUGGUGGGAcacGUgGCGGCGAUgaagaGCg -3'
miRNA:   3'- -CGGCGCUACCUU---CGgCGCCGCUAg----CG- -5'
14189 3' -58.5 NC_003521.1 + 135809 0.76 0.407551
Target:  5'- aGCgGCGGaGGGAGgCGCGGCGAcgaaCGCu -3'
miRNA:   3'- -CGgCGCUaCCUUCgGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 90 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 88052 0.76 0.424055
Target:  5'- aGCgCGCGGauGAGGUCGCGGUGGUCGg -3'
miRNA:   3'- -CG-GCGCUacCUUCGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 240639 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 165020 0.75 0.449542
Target:  5'- gGCCGCGAUc---GCCGCGGCuuccAUCGCg -3'
miRNA:   3'- -CGGCGCUAccuuCGGCGCCGc---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 49575 0.75 0.466995
Target:  5'- uGCCGCG-UGG--GCCGCGGCGc-CGCc -3'
miRNA:   3'- -CGGCGCuACCuuCGGCGCCGCuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.