miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 107786 0.66 0.903224
Target:  5'- -aCGCuGAuucucUGGGAGCCGaCGGUGAUuaggguguuccacCGCg -3'
miRNA:   3'- cgGCG-CU-----ACCUUCGGC-GCCGCUA-------------GCG- -5'
14189 3' -58.5 NC_003521.1 + 43099 0.66 0.903817
Target:  5'- cGCgCGCGAc-GAGcugaccaagcGCUGCGGCGAgCGCu -3'
miRNA:   3'- -CG-GCGCUacCUU----------CGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 214987 0.66 0.903817
Target:  5'- gGCCaggGgGGUGcGAGCCaGCGGCGucUCGUa -3'
miRNA:   3'- -CGG---CgCUACcUUCGG-CGCCGCu-AGCG- -5'
14189 3' -58.5 NC_003521.1 + 224797 0.66 0.897794
Target:  5'- cGUCGUGcgGGAcGCgCGUGGCGuagggCGUc -3'
miRNA:   3'- -CGGCGCuaCCUuCG-GCGCCGCua---GCG- -5'
14189 3' -58.5 NC_003521.1 + 83749 0.66 0.897794
Target:  5'- aCCGCG--GGggGCCugggacaggGUGGCGG-CGCc -3'
miRNA:   3'- cGGCGCuaCCuuCGG---------CGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 192865 0.66 0.897794
Target:  5'- cGCCGCGAcuUGuGcuuccGAGCgCGaCGGCGGUUGa -3'
miRNA:   3'- -CGGCGCU--AC-C-----UUCG-GC-GCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 124036 0.66 0.920626
Target:  5'- gGCCGUaGAcGGccagcguGCCGCGGCGG-CGg -3'
miRNA:   3'- -CGGCG-CUaCCuu-----CGGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 203829 0.66 0.897794
Target:  5'- cGCCGCGAcgcccucGUCGCGGauGUCGCc -3'
miRNA:   3'- -CGGCGCUaccuu--CGGCGCCgcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 224697 0.66 0.897794
Target:  5'- cGCCcggGCGuGUGGAAGuucacgucccgcCCGUGGUGcUCGCc -3'
miRNA:   3'- -CGG---CGC-UACCUUC------------GGCGCCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 113577 0.66 0.900228
Target:  5'- -aCGCGGUGGGgcugGGCCucgggggcaacggggGCGGCGcUCuGCu -3'
miRNA:   3'- cgGCGCUACCU----UCGG---------------CGCCGCuAG-CG- -5'
14189 3' -58.5 NC_003521.1 + 127385 0.66 0.903817
Target:  5'- -gCGUGAUgaagGGcGGCCacagGCGGUGGUCGUg -3'
miRNA:   3'- cgGCGCUA----CCuUCGG----CGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 193315 0.66 0.903817
Target:  5'- --gGUGGUGGGcacGGUgGgGGUGGUCGCc -3'
miRNA:   3'- cggCGCUACCU---UCGgCgCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 54428 0.66 0.89718
Target:  5'- -aCGCcGUGGAAGCUgacgcgguuguugGCGGUGAauuccagcUCGCu -3'
miRNA:   3'- cgGCGcUACCUUCGG-------------CGCCGCU--------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 120934 0.66 0.903817
Target:  5'- cCCGCGgcGGcGGCUcCGGCGAgggGCa -3'
miRNA:   3'- cGGCGCuaCCuUCGGcGCCGCUag-CG- -5'
14189 3' -58.5 NC_003521.1 + 125318 0.66 0.903817
Target:  5'- cGCgGCGGUGGGuccGGCCacagagcgacacGCGGCccaCGCu -3'
miRNA:   3'- -CGgCGCUACCU---UCGG------------CGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 211686 0.66 0.906167
Target:  5'- uGCCGCGGaGGAuccacagggccuccaGcuugccGCCGUGGCGGaucaCGCa -3'
miRNA:   3'- -CGGCGCUaCCU---------------U------CGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 133209 0.66 0.897794
Target:  5'- aCCGCGGUcGggGCgcggguucaGgGGCGAUgGCg -3'
miRNA:   3'- cGGCGCUAcCuuCGg--------CgCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 30250 0.66 0.903817
Target:  5'- uCCGCGc-GGuuGCCGUGGCGca-GCu -3'
miRNA:   3'- cGGCGCuaCCuuCGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 215444 0.66 0.895327
Target:  5'- aGCCGCGGgugcUGGcgccAGGCCGagggagccacgaaGGCGAagGCc -3'
miRNA:   3'- -CGGCGCU----ACC----UUCGGCg------------CCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 155729 0.66 0.89718
Target:  5'- cGCCGcCGAUGGGGgaguuucGCCGUaccGCGAgaCGCu -3'
miRNA:   3'- -CGGC-GCUACCUU-------CGGCGc--CGCUa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.