miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 240639 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 240449 0.67 0.878501
Target:  5'- cCCGCGu--GAGGCgGgCaGCGGUCGCa -3'
miRNA:   3'- cGGCGCuacCUUCGgC-GcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 240113 0.66 0.920626
Target:  5'- cGuuGgGGUGGGcgugcGGUCGUcccGGCGggCGCg -3'
miRNA:   3'- -CggCgCUACCU-----UCGGCG---CCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 237054 0.68 0.850058
Target:  5'- uGCCGCGAcgacgcaugUGuccGAGCaUGCGGCGGUCu- -3'
miRNA:   3'- -CGGCGCU---------ACc--UUCG-GCGCCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 236469 0.8 0.24875
Target:  5'- gGCCGCGAUGagcGAAccGCCgGCGGCGGUgGCg -3'
miRNA:   3'- -CGGCGCUAC---CUU--CGG-CGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 234734 0.75 0.475851
Target:  5'- aGCCGUGgcGGAAcGCCGCcgcaccGGCcGUCGCa -3'
miRNA:   3'- -CGGCGCuaCCUU-CGGCG------CCGcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 234436 0.73 0.577904
Target:  5'- cGCCGCGGU---AGCUGCGGCGccccucCGCg -3'
miRNA:   3'- -CGGCGCUAccuUCGGCGCCGCua----GCG- -5'
14189 3' -58.5 NC_003521.1 + 233176 0.68 0.818801
Target:  5'- cGCCGCcGUGGcGGCCGCcguuaccGuCGGUCGUu -3'
miRNA:   3'- -CGGCGcUACCuUCGGCGc------C-GCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 232870 0.7 0.740333
Target:  5'- gGCCGCGAca----CCGCGGCGAUCu- -3'
miRNA:   3'- -CGGCGCUaccuucGGCGCCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 232704 0.67 0.871673
Target:  5'- cGCCGUcuggagaucuacGAUGGGcagacgacuccgAGCCGCuGCGAUCc- -3'
miRNA:   3'- -CGGCG------------CUACCU------------UCGGCGcCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 228737 0.7 0.749491
Target:  5'- gGCUGCG-UGGuGAGCaGCGGCGugCGCa -3'
miRNA:   3'- -CGGCGCuACC-UUCGgCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 228242 0.8 0.260257
Target:  5'- gGUCGUGGUGGGugccGCCGUGGUGGUCGg -3'
miRNA:   3'- -CGGCGCUACCUu---CGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 226364 0.7 0.712384
Target:  5'- cGCCGC---GGGAGCgGCGGCuGA-CGCc -3'
miRNA:   3'- -CGGCGcuaCCUUCGgCGCCG-CUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 224797 0.66 0.897794
Target:  5'- cGUCGUGcgGGAcGCgCGUGGCGuagggCGUc -3'
miRNA:   3'- -CGGCGCuaCCUuCG-GCGCCGCua---GCG- -5'
14189 3' -58.5 NC_003521.1 + 224697 0.66 0.897794
Target:  5'- cGCCcggGCGuGUGGAAGuucacgucccgcCCGUGGUGcUCGCc -3'
miRNA:   3'- -CGG---CGC-UACCUUC------------GGCGCCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 224198 0.66 0.920626
Target:  5'- cGCCGCGAca-GAGCCaGCGGUacuGAcgcccguagUCGCg -3'
miRNA:   3'- -CGGCGCUaccUUCGG-CGCCG---CU---------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 224017 0.69 0.802239
Target:  5'- aGCgGCGGgcccGGcGGUCGgGGCGggCGCc -3'
miRNA:   3'- -CGgCGCUa---CCuUCGGCgCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 223937 0.7 0.74858
Target:  5'- gGCCGaggggguCGA-GGcGGCCGCGGgGAaCGCa -3'
miRNA:   3'- -CGGC-------GCUaCCuUCGGCGCCgCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 223315 0.67 0.878501
Target:  5'- cGCCGcCGGgccgGGAAccGCCGUgaccGGCGG-CGCc -3'
miRNA:   3'- -CGGC-GCUa---CCUU--CGGCG----CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 223224 0.7 0.731091
Target:  5'- cGCCGCGAcgccUGGcgcguccAGCCGUGGCaacGAagGCg -3'
miRNA:   3'- -CGGCGCU----ACCu------UCGGCGCCG---CUagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.