miRNA display CGI


Results 21 - 40 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 200035 0.66 0.915234
Target:  5'- aCCGCGccGGGAGUC-CGGa-GUCGCc -3'
miRNA:   3'- cGGCGCuaCCUUCGGcGCCgcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 137282 0.66 0.915234
Target:  5'- gGCCccaGCGAccUGG-AGCUGCGGgUGG-CGCg -3'
miRNA:   3'- -CGG---CGCU--ACCuUCGGCGCC-GCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 59595 0.66 0.914683
Target:  5'- cGCCaaGAaGGAcgguaguggcggcGGCCccgGCGGCGAcCGCg -3'
miRNA:   3'- -CGGcgCUaCCU-------------UCGG---CGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 163463 0.66 0.910201
Target:  5'- cCCGUGGUGGGcuacuacaacgaccCCGUGGCGGUCu- -3'
miRNA:   3'- cGGCGCUACCUuc------------GGCGCCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 150510 0.66 0.910201
Target:  5'- cGCCgGCGGggcccugcuaggagcGGGAGCCGUGG-GGUCcgGCg -3'
miRNA:   3'- -CGG-CGCUa--------------CCUUCGGCGCCgCUAG--CG- -5'
14189 3' -58.5 NC_003521.1 + 134532 0.66 0.909631
Target:  5'- cGCCGCc-UGGuuGCUGUugcccuccacGGCGAUgCGCa -3'
miRNA:   3'- -CGGCGcuACCuuCGGCG----------CCGCUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 94702 0.66 0.909631
Target:  5'- gGCCGacaccagauagaCGGUGGGcaGGUCGCGGaaauCGAUcCGCu -3'
miRNA:   3'- -CGGC------------GCUACCU--UCGGCGCC----GCUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 125835 0.66 0.909631
Target:  5'- -gCGCGuc--GGGCuCGCGGUGGUCGUa -3'
miRNA:   3'- cgGCGCuaccUUCG-GCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 168553 0.66 0.909631
Target:  5'- gGCgGCGcUGGcGGGCUGCGGguaaGGUgGCg -3'
miRNA:   3'- -CGgCGCuACC-UUCGGCGCCg---CUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 95522 0.66 0.909631
Target:  5'- gGCCGaacUGGAuGCC-CGGCGAgacgccggCGCg -3'
miRNA:   3'- -CGGCgcuACCUuCGGcGCCGCUa-------GCG- -5'
14189 3' -58.5 NC_003521.1 + 206351 0.66 0.909631
Target:  5'- uCCGCGAgcUGcuGGCCuGCGGCGA-CGa -3'
miRNA:   3'- cGGCGCU--ACcuUCGG-CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 76098 0.66 0.909631
Target:  5'- cCCGCGcugGUGGuAGGCCGCaccGCG-UCGUc -3'
miRNA:   3'- cGGCGC---UACC-UUCGGCGc--CGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 27459 0.66 0.909631
Target:  5'- gGCCGUGAgcgccaGGcuGGCCagguccgucauGUGGCGGUCGg -3'
miRNA:   3'- -CGGCGCUa-----CCu-UCGG-----------CGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 64727 0.66 0.909631
Target:  5'- aGCUGagcaagaaGAUGGAcGCCGUGGCcaaGA-CGCc -3'
miRNA:   3'- -CGGCg-------CUACCUuCGGCGCCG---CUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 215049 0.66 0.909059
Target:  5'- aGCCGCG-UGGAgccccugGGCUGCcuGGUGGU-GCc -3'
miRNA:   3'- -CGGCGCuACCU-------UCGGCG--CCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 19441 0.66 0.909059
Target:  5'- --gGUGAgaaagggGGGAGgCGCGGCGGgaccaugUCGCu -3'
miRNA:   3'- cggCGCUa------CCUUCgGCGCCGCU-------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 113365 0.66 0.909059
Target:  5'- gGCCggggGCGAggaGGAGgguuacggcggacGCCGCGgGCGGgugCGCa -3'
miRNA:   3'- -CGG----CGCUa--CCUU-------------CGGCGC-CGCUa--GCG- -5'
14189 3' -58.5 NC_003521.1 + 76295 0.66 0.907909
Target:  5'- uGCUGCGAgUccggguccggcagcGGAGGUgGCGGCGAcaGCu -3'
miRNA:   3'- -CGGCGCU-A--------------CCUUCGgCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 211686 0.66 0.906167
Target:  5'- uGCCGCGGaGGAuccacagggccuccaGcuugccGCCGUGGCGGaucaCGCa -3'
miRNA:   3'- -CGGCGCUaCCU---------------U------CGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 107790 0.66 0.906167
Target:  5'- aCUGUGGUGGggGCUGCugauacugugccgguGGCGGcUGUc -3'
miRNA:   3'- cGGCGCUACCuuCGGCG---------------CCGCUaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.