miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 211686 0.66 0.906167
Target:  5'- uGCCGCGGaGGAuccacagggccuccaGcuugccGCCGUGGCGGaucaCGCa -3'
miRNA:   3'- -CGGCGCUaCCU---------------U------CGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 43099 0.66 0.903817
Target:  5'- cGCgCGCGAc-GAGcugaccaagcGCUGCGGCGAgCGCu -3'
miRNA:   3'- -CG-GCGCUacCUU----------CGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 84074 0.66 0.903817
Target:  5'- gGCUcuugGCGAUGGucauGGCCGUGcGCGAggUCa- -3'
miRNA:   3'- -CGG----CGCUACCu---UCGGCGC-CGCU--AGcg -5'
14189 3' -58.5 NC_003521.1 + 89842 0.66 0.903817
Target:  5'- cGCCGUagccGAUGucGGCCGCcaGCGccgcGUCGCg -3'
miRNA:   3'- -CGGCG----CUACcuUCGGCGc-CGC----UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 193315 0.66 0.903817
Target:  5'- --gGUGGUGGGcacGGUgGgGGUGGUCGCc -3'
miRNA:   3'- cggCGCUACCU---UCGgCgCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 127295 0.66 0.903817
Target:  5'- cGgCGCGAgGGAucccAGCCGCuGCGcaCGCu -3'
miRNA:   3'- -CgGCGCUaCCU----UCGGCGcCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 188506 0.66 0.903817
Target:  5'- cGCCGcCGAgauacgaGGAGGCCGgCgGGCcccacGUCGCc -3'
miRNA:   3'- -CGGC-GCUa------CCUUCGGC-G-CCGc----UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 221926 0.66 0.903817
Target:  5'- gGCgUGCGAggGGAAGauGCacgacacguccaGGCGGUCGCc -3'
miRNA:   3'- -CG-GCGCUa-CCUUCggCG------------CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 42562 0.66 0.903817
Target:  5'- uGCCGC--UGGGAcggcuaucGCUGCGGCGucaGCc -3'
miRNA:   3'- -CGGCGcuACCUU--------CGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 36902 0.66 0.903817
Target:  5'- aGCCGUGGUGGAAGa---GGCu-UCGUg -3'
miRNA:   3'- -CGGCGCUACCUUCggcgCCGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 18781 0.66 0.903817
Target:  5'- cGCagGCGGUGGAgGGCCaGCGcuGCuuUCGCg -3'
miRNA:   3'- -CGg-CGCUACCU-UCGG-CGC--CGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 125318 0.66 0.903817
Target:  5'- cGCgGCGGUGGGuccGGCCacagagcgacacGCGGCccaCGCu -3'
miRNA:   3'- -CGgCGCUACCU---UCGG------------CGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 30250 0.66 0.903817
Target:  5'- uCCGCGc-GGuuGCCGUGGCGca-GCu -3'
miRNA:   3'- cGGCGCuaCCuuCGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 214987 0.66 0.903817
Target:  5'- gGCCaggGgGGUGcGAGCCaGCGGCGucUCGUa -3'
miRNA:   3'- -CGG---CgCUACcUUCGG-CGCCGCu-AGCG- -5'
14189 3' -58.5 NC_003521.1 + 120934 0.66 0.903817
Target:  5'- cCCGCGgcGGcGGCUcCGGCGAgggGCa -3'
miRNA:   3'- cGGCGCuaCCuUCGGcGCCGCUag-CG- -5'
14189 3' -58.5 NC_003521.1 + 127385 0.66 0.903817
Target:  5'- -gCGUGAUgaagGGcGGCCacagGCGGUGGUCGUg -3'
miRNA:   3'- cgGCGCUA----CCuUCGG----CGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 107786 0.66 0.903224
Target:  5'- -aCGCuGAuucucUGGGAGCCGaCGGUGAUuaggguguuccacCGCg -3'
miRNA:   3'- cgGCG-CU-----ACCUUCGGC-GCCGCUA-------------GCG- -5'
14189 3' -58.5 NC_003521.1 + 169966 0.66 0.902629
Target:  5'- cGuuGCucuccuccugGGAGGCgGCGGCGGgggaCGCu -3'
miRNA:   3'- -CggCGcua-------CCUUCGgCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 113577 0.66 0.900228
Target:  5'- -aCGCGGUGGGgcugGGCCucgggggcaacggggGCGGCGcUCuGCu -3'
miRNA:   3'- cgGCGCUACCU----UCGG---------------CGCCGCuAG-CG- -5'
14189 3' -58.5 NC_003521.1 + 98738 0.66 0.897794
Target:  5'- uGCCGCGggGGuGGUCGUcGUaGUCGUa -3'
miRNA:   3'- -CGGCGCuaCCuUCGGCGcCGcUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.