miRNA display CGI


Results 61 - 80 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 83749 0.66 0.897794
Target:  5'- aCCGCG--GGggGCCugggacaggGUGGCGG-CGCc -3'
miRNA:   3'- cGGCGCuaCCuuCGG---------CGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 13208 0.66 0.897794
Target:  5'- cGCCGUGuUGGAgGGCCGacCGGCGcccaaGCc -3'
miRNA:   3'- -CGGCGCuACCU-UCGGC--GCCGCuag--CG- -5'
14189 3' -58.5 NC_003521.1 + 192865 0.66 0.897794
Target:  5'- cGCCGCGAcuUGuGcuuccGAGCgCGaCGGCGGUUGa -3'
miRNA:   3'- -CGGCGCU--AC-C-----UUCG-GC-GCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 203829 0.66 0.897794
Target:  5'- cGCCGCGAcgcccucGUCGCGGauGUCGCc -3'
miRNA:   3'- -CGGCGCUaccuu--CGGCGCCgcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 224697 0.66 0.897794
Target:  5'- cGCCcggGCGuGUGGAAGuucacgucccgcCCGUGGUGcUCGCc -3'
miRNA:   3'- -CGG---CGC-UACCUUC------------GGCGCCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 224797 0.66 0.897794
Target:  5'- cGUCGUGcgGGAcGCgCGUGGCGuagggCGUc -3'
miRNA:   3'- -CGGCGCuaCCUuCG-GCGCCGCua---GCG- -5'
14189 3' -58.5 NC_003521.1 + 103199 0.66 0.897794
Target:  5'- aCCGCGAUGcGcGAGCgGUaGGCGuccagCGCg -3'
miRNA:   3'- cGGCGCUAC-C-UUCGgCG-CCGCua---GCG- -5'
14189 3' -58.5 NC_003521.1 + 98738 0.66 0.897794
Target:  5'- uGCCGCGggGGuGGUCGUcGUaGUCGUa -3'
miRNA:   3'- -CGGCGCuaCCuUCGGCGcCGcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 133209 0.66 0.897794
Target:  5'- aCCGCGGUcGggGCgcggguucaGgGGCGAUgGCg -3'
miRNA:   3'- cGGCGCUAcCuuCGg--------CgCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 187601 0.66 0.897794
Target:  5'- uGCUGcCGGUGGGcacGGCCuGCcgGGCGAgccgggccgCGCg -3'
miRNA:   3'- -CGGC-GCUACCU---UCGG-CG--CCGCUa--------GCG- -5'
14189 3' -58.5 NC_003521.1 + 129647 0.66 0.897794
Target:  5'- uCCGCGGcgccGucGCCGgGGCGGcCGCg -3'
miRNA:   3'- cGGCGCUac--CuuCGGCgCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 47635 0.66 0.897794
Target:  5'- gGCCGUGAcGGcGGCUcugGCGGCagcugCGCa -3'
miRNA:   3'- -CGGCGCUaCCuUCGG---CGCCGcua--GCG- -5'
14189 3' -58.5 NC_003521.1 + 99946 0.66 0.897794
Target:  5'- cGCaCGCag-GGggGCgGCGGCGccUCGg -3'
miRNA:   3'- -CG-GCGcuaCCuuCGgCGCCGCu-AGCg -5'
14189 3' -58.5 NC_003521.1 + 48543 0.66 0.897794
Target:  5'- uGCCGaCGAacggcgUGGAGacGCCGCuGGUGAagGUg -3'
miRNA:   3'- -CGGC-GCU------ACCUU--CGGCG-CCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 90572 0.66 0.897794
Target:  5'- gGCCGCGGUGcAGGCCGaC-GUGA-CGUg -3'
miRNA:   3'- -CGGCGCUACcUUCGGC-GcCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 54428 0.66 0.89718
Target:  5'- -aCGCcGUGGAAGCUgacgcgguuguugGCGGUGAauuccagcUCGCu -3'
miRNA:   3'- cgGCGcUACCUUCGG-------------CGCCGCU--------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 155729 0.66 0.89718
Target:  5'- cGCCGcCGAUGGGGgaguuucGCCGUaccGCGAgaCGCu -3'
miRNA:   3'- -CGGC-GCUACCUU-------CGGCGc--CGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 165012 0.66 0.895947
Target:  5'- gGCCGCaagGAcagguuccucagcaUGGugcuGCCGCGGCG-UCuGCa -3'
miRNA:   3'- -CGGCG---CU--------------ACCuu--CGGCGCCGCuAG-CG- -5'
14189 3' -58.5 NC_003521.1 + 215444 0.66 0.895327
Target:  5'- aGCCGCGGgugcUGGcgccAGGCCGagggagccacgaaGGCGAagGCc -3'
miRNA:   3'- -CGGCGCU----ACC----UUCGGCg------------CCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 60234 0.67 0.894081
Target:  5'- aGCUGCGGUcucGAGGCUGaCGGCGcuauaagauacaucUCGCg -3'
miRNA:   3'- -CGGCGCUAc--CUUCGGC-GCCGCu-------------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.