miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 37514 0.71 0.658903
Target:  5'- cCCGCGGacaucagcgacguccUGGggGUgggcaGCGGgGGUCGCg -3'
miRNA:   3'- cGGCGCU---------------ACCuuCGg----CGCCgCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 39886 0.66 0.920626
Target:  5'- cGuuGgGGUGGGcgugcGGUCGUcccGGCGggCGCg -3'
miRNA:   3'- -CggCgCUACCU-----UCGGCG---CCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 40221 0.67 0.878501
Target:  5'- cCCGCGu--GAGGCgGgCaGCGGUCGCa -3'
miRNA:   3'- cGGCGCuacCUUCGgC-GcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 40412 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 40875 0.7 0.721772
Target:  5'- aGCCGCGGagGGAAGggaCCGgGGCGGggGUc -3'
miRNA:   3'- -CGGCGCUa-CCUUC---GGCgCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 42562 0.66 0.903817
Target:  5'- uGCCGC--UGGGAcggcuaucGCUGCGGCGucaGCc -3'
miRNA:   3'- -CGGCGcuACCUU--------CGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 42628 0.7 0.721772
Target:  5'- gGCCGCug-GGAacacgucagcAGCCGCGGUGuaggCGUa -3'
miRNA:   3'- -CGGCGcuaCCU----------UCGGCGCCGCua--GCG- -5'
14189 3' -58.5 NC_003521.1 + 43099 0.66 0.903817
Target:  5'- cGCgCGCGAc-GAGcugaccaagcGCUGCGGCGAgCGCu -3'
miRNA:   3'- -CG-GCGCUacCUU----------CGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 43433 0.68 0.850058
Target:  5'- cCCGaCGA-GGAGGCgGCGGCGGc--- -3'
miRNA:   3'- cGGC-GCUaCCUUCGgCGCCGCUagcg -5'
14189 3' -58.5 NC_003521.1 + 43480 0.66 0.915234
Target:  5'- cGCgGCGGccgUGcuGGCCGCGGCGGccaacauccgUCaGCg -3'
miRNA:   3'- -CGgCGCU---ACcuUCGGCGCCGCU----------AG-CG- -5'
14189 3' -58.5 NC_003521.1 + 44245 0.67 0.864653
Target:  5'- cGCCGUGcgcGGGAGUC-CGGCGucaCGCc -3'
miRNA:   3'- -CGGCGCua-CCUUCGGcGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 44354 0.67 0.864653
Target:  5'- uCCGCGAcgcgcUGG-GGCUGCGGCccaCGCc -3'
miRNA:   3'- cGGCGCU-----ACCuUCGGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 44485 0.67 0.871673
Target:  5'- uGCaCGCGcUGGAaaucgagcugcAGCCGCcgucgucaGGCGG-CGCa -3'
miRNA:   3'- -CG-GCGCuACCU-----------UCGGCG--------CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 45437 0.68 0.850058
Target:  5'- cGgCGCGGucaUGGccucGCCGUGGCGuGUUGCu -3'
miRNA:   3'- -CgGCGCU---ACCuu--CGGCGCCGC-UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 45768 0.66 0.920626
Target:  5'- aCCGCGucaGGAAGCgGCGGaCGGgaCGa -3'
miRNA:   3'- cGGCGCua-CCUUCGgCGCC-GCUa-GCg -5'
14189 3' -58.5 NC_003521.1 + 46407 0.67 0.891565
Target:  5'- gGCgCGCGGgccaGGAAGCgGCgacgGGCGAagCGUa -3'
miRNA:   3'- -CG-GCGCUa---CCUUCGgCG----CCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 46556 0.68 0.826859
Target:  5'- cUCGCGccGGguGCUgaaGCGGUGGUUGCg -3'
miRNA:   3'- cGGCGCuaCCuuCGG---CGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 47635 0.66 0.897794
Target:  5'- gGCCGUGAcGGcGGCUcugGCGGCagcugCGCa -3'
miRNA:   3'- -CGGCGCUaCCuUCGG---CGCCGcua--GCG- -5'
14189 3' -58.5 NC_003521.1 + 47954 0.73 0.539965
Target:  5'- cGUCGCGcucGGAAGCacaaguCGCGGCG-UCGCu -3'
miRNA:   3'- -CGGCGCua-CCUUCG------GCGCCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 48543 0.66 0.897794
Target:  5'- uGCCGaCGAacggcgUGGAGacGCCGCuGGUGAagGUg -3'
miRNA:   3'- -CGGC-GCU------ACCUU--CGGCG-CCGCUagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.