miRNA display CGI


Results 81 - 100 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 30424 0.67 0.911275
Target:  5'- aCGCUGCGGUcCCAGCugaacauguccaGGCGGCcgagggUGCc -3'
miRNA:   3'- aGCGAUGCCGuGGUCG------------UUGUCG------ACGa -5'
14195 3' -56.4 NC_003521.1 + 19168 0.67 0.911275
Target:  5'- -aGC-ACGGCGCUGGUGGCcgacgugcacgAGCUGCa -3'
miRNA:   3'- agCGaUGCCGUGGUCGUUG-----------UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 219769 0.67 0.911275
Target:  5'- gUCGcCUACGuCGCCuuuGCGACAGCgGUg -3'
miRNA:   3'- -AGC-GAUGCcGUGGu--CGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 239242 0.67 0.911275
Target:  5'- gCGCUgcACGGCcgucAgCAGCGACGGCgggugugGCg -3'
miRNA:   3'- aGCGA--UGCCG----UgGUCGUUGUCGa------CGa -5'
14195 3' -56.4 NC_003521.1 + 116875 0.67 0.911275
Target:  5'- gCGCgcaguggcGCGGCugCGGCGGCGcGCcgGCg -3'
miRNA:   3'- aGCGa-------UGCCGugGUCGUUGU-CGa-CGa -5'
14195 3' -56.4 NC_003521.1 + 150965 0.67 0.910686
Target:  5'- gUCGCgcgacGCGGCGCUGGCGGCcgacaucGGCUacgGCg -3'
miRNA:   3'- -AGCGa----UGCCGUGGUCGUUG-------UCGA---CGa -5'
14195 3' -56.4 NC_003521.1 + 153569 0.67 0.907706
Target:  5'- gCGC-ACGGCGCaCAgccgcuccaccaccuGCAGCAGCaGCg -3'
miRNA:   3'- aGCGaUGCCGUG-GU---------------CGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 40494 0.67 0.907706
Target:  5'- gCGCcACGGCGCCGcagcGCAucucgaacuccuccaGCAGCgGCg -3'
miRNA:   3'- aGCGaUGCCGUGGU----CGU---------------UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 167669 0.67 0.905282
Target:  5'- gUCGCaggccgagGCGGCGCC-GCcGCcGCUGCc -3'
miRNA:   3'- -AGCGa-------UGCCGUGGuCGuUGuCGACGa -5'
14195 3' -56.4 NC_003521.1 + 33785 0.67 0.905282
Target:  5'- -gGcCUGCGGC-CCAGCcaccGACuGCUGUUg -3'
miRNA:   3'- agC-GAUGCCGuGGUCG----UUGuCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 186611 0.67 0.905282
Target:  5'- gUCGgUACuGCcggacaccgGCCAGCAGCggucgGGCUGCUc -3'
miRNA:   3'- -AGCgAUGcCG---------UGGUCGUUG-----UCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 18732 0.67 0.905282
Target:  5'- aCGCUGcCGGCGCUgcagGGCG--GGCUGUg -3'
miRNA:   3'- aGCGAU-GCCGUGG----UCGUugUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 64898 0.67 0.905282
Target:  5'- gCGCUACaaaCGCgAGCuggAGCAGCUGCa -3'
miRNA:   3'- aGCGAUGcc-GUGgUCG---UUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 179661 0.67 0.905282
Target:  5'- aUUGUgggagAgGGaCugCAGCAugAGCUGCa -3'
miRNA:   3'- -AGCGa----UgCC-GugGUCGUugUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 177742 0.67 0.905282
Target:  5'- -gGCaGC-GCGCCGGCG-CAGCUGUa -3'
miRNA:   3'- agCGaUGcCGUGGUCGUuGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 163355 0.67 0.905282
Target:  5'- ----aGCGGUAgCAGCGGCGGCgGCa -3'
miRNA:   3'- agcgaUGCCGUgGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 207936 0.67 0.905282
Target:  5'- -gGC-ACGGCGgCAGCAcCGGCgGCg -3'
miRNA:   3'- agCGaUGCCGUgGUCGUuGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 123685 0.67 0.903439
Target:  5'- gCGCUGCGGCguggcgguggaagaGgaGGCGGCGGCUGa- -3'
miRNA:   3'- aGCGAUGCCG--------------UggUCGUUGUCGACga -5'
14195 3' -56.4 NC_003521.1 + 167700 0.67 0.899062
Target:  5'- aCGCUcguggaggagGCGGCGgUAGCAGCGGUaGUg -3'
miRNA:   3'- aGCGA----------UGCCGUgGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 143541 0.67 0.899062
Target:  5'- gCGCgccgcCGGCgACgAGCAGCAGCcGCc -3'
miRNA:   3'- aGCGau---GCCG-UGgUCGUUGUCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.