miRNA display CGI


Results 61 - 80 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 84752 0.66 0.922575
Target:  5'- cUUGCUcgggcGCGGCGgCGGCGAC-GUUGUUg -3'
miRNA:   3'- -AGCGA-----UGCCGUgGUCGUUGuCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 104218 0.66 0.922032
Target:  5'- cUGCUGCaGC-CCAGCGaggacguGgAGCUGCg -3'
miRNA:   3'- aGCGAUGcCGuGGUCGU-------UgUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 47982 0.66 0.920938
Target:  5'- gUCGCUucucguccacggacGCGcCGCCgGGCuucuGCGGCUGCUg -3'
miRNA:   3'- -AGCGA--------------UGCcGUGG-UCGu---UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 176908 0.67 0.919281
Target:  5'- cUGCUGCaGCuCCAGCAucuugugggugcccaACuGCUGCa -3'
miRNA:   3'- aGCGAUGcCGuGGUCGU---------------UGuCGACGa -5'
14195 3' -56.4 NC_003521.1 + 73220 0.67 0.919281
Target:  5'- gCGcCUGCGGCGCCucuGCGcgccgcucuccaucgACAcgcGCUGCa -3'
miRNA:   3'- aGC-GAUGCCGUGGu--CGU---------------UGU---CGACGa -5'
14195 3' -56.4 NC_003521.1 + 209105 0.67 0.91704
Target:  5'- -gGCcGCGGCGucCCAGCAcgcgcACAuGCUGCc -3'
miRNA:   3'- agCGaUGCCGU--GGUCGU-----UGU-CGACGa -5'
14195 3' -56.4 NC_003521.1 + 19473 0.67 0.91704
Target:  5'- gUCGCUGCGcgGCCAGguGCAGgUGg- -3'
miRNA:   3'- -AGCGAUGCcgUGGUCguUGUCgACga -5'
14195 3' -56.4 NC_003521.1 + 116665 0.67 0.91704
Target:  5'- gCGCUAUcGCcuGCaCGGCAGCGGCgGCg -3'
miRNA:   3'- aGCGAUGcCG--UG-GUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 214652 0.67 0.91704
Target:  5'- cCGUgAUGGCcgucuCCAGCAGCAGCaGUc -3'
miRNA:   3'- aGCGaUGCCGu----GGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 32597 0.67 0.91704
Target:  5'- cUGCUGUGGCucuggugucuguACCuGCGACuGCUGCa -3'
miRNA:   3'- aGCGAUGCCG------------UGGuCGUUGuCGACGa -5'
14195 3' -56.4 NC_003521.1 + 191243 0.67 0.91704
Target:  5'- aCGCcuuccuCGGCACUcgucggggaAGCGGCAGCcGCa -3'
miRNA:   3'- aGCGau----GCCGUGG---------UCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 142658 0.67 0.91704
Target:  5'- -aGCgguCGGCGCagcgccgucagCAGCGACGGCgGCa -3'
miRNA:   3'- agCGau-GCCGUG-----------GUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 60501 0.67 0.91704
Target:  5'- aCGCUGguaGGCucCCGGgAGgAGCUGCa -3'
miRNA:   3'- aGCGAUg--CCGu-GGUCgUUgUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 186904 0.67 0.913609
Target:  5'- -aGCUACcugacguccaaggggGGCGCCGGUGGCGGggGCg -3'
miRNA:   3'- agCGAUG---------------CCGUGGUCGUUGUCgaCGa -5'
14195 3' -56.4 NC_003521.1 + 136613 0.67 0.911275
Target:  5'- cUCGCUG-GGCugCAGCAGCAcGUaaucgGCc -3'
miRNA:   3'- -AGCGAUgCCGugGUCGUUGU-CGa----CGa -5'
14195 3' -56.4 NC_003521.1 + 30424 0.67 0.911275
Target:  5'- aCGCUGCGGUcCCAGCugaacauguccaGGCGGCcgagggUGCc -3'
miRNA:   3'- aGCGAUGCCGuGGUCG------------UUGUCG------ACGa -5'
14195 3' -56.4 NC_003521.1 + 39014 0.67 0.911275
Target:  5'- gCGCUgcACGGCcgucAgCAGCGACGGCgggugugGCg -3'
miRNA:   3'- aGCGA--UGCCG----UgGUCGUUGUCGa------CGa -5'
14195 3' -56.4 NC_003521.1 + 19168 0.67 0.911275
Target:  5'- -aGC-ACGGCGCUGGUGGCcgacgugcacgAGCUGCa -3'
miRNA:   3'- agCGaUGCCGUGGUCGUUG-----------UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 239242 0.67 0.911275
Target:  5'- gCGCUgcACGGCcgucAgCAGCGACGGCgggugugGCg -3'
miRNA:   3'- aGCGA--UGCCG----UgGUCGUUGUCGa------CGa -5'
14195 3' -56.4 NC_003521.1 + 123674 0.67 0.911275
Target:  5'- gCGCacgAUGGcCAUCuGCGcCAGCUGCUg -3'
miRNA:   3'- aGCGa--UGCC-GUGGuCGUuGUCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.