miRNA display CGI


Results 41 - 60 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 195554 0.66 0.932951
Target:  5'- -aGC-ACGGUGCCAGUGGCAGUaccaGCa -3'
miRNA:   3'- agCGaUGCCGUGGUCGUUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 98829 0.66 0.932951
Target:  5'- -aGCUGCuuGGCGCgGGCcAGCucccGCUGCa -3'
miRNA:   3'- agCGAUG--CCGUGgUCG-UUGu---CGACGa -5'
14195 3' -56.4 NC_003521.1 + 110099 0.66 0.927878
Target:  5'- gCGCUGCGGUcaaGCgGGCucuGACAGC-GCc -3'
miRNA:   3'- aGCGAUGCCG---UGgUCG---UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 50478 0.66 0.927878
Target:  5'- aUGCUGCccGGCGCguGCcACAGCgugucgGCg -3'
miRNA:   3'- aGCGAUG--CCGUGguCGuUGUCGa-----CGa -5'
14195 3' -56.4 NC_003521.1 + 209457 0.66 0.927878
Target:  5'- aUGCUGucCGGCgACguGCAGCGGCUcaucagGCUg -3'
miRNA:   3'- aGCGAU--GCCG-UGguCGUUGUCGA------CGA- -5'
14195 3' -56.4 NC_003521.1 + 191254 0.66 0.927878
Target:  5'- gCGCcGCGGC-CCAcGCGGCAGgUGgUg -3'
miRNA:   3'- aGCGaUGCCGuGGU-CGUUGUCgACgA- -5'
14195 3' -56.4 NC_003521.1 + 98629 0.66 0.927878
Target:  5'- -gGCgagaGCGGCGgCGGCggUAGCgGCg -3'
miRNA:   3'- agCGa---UGCCGUgGUCGuuGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 152298 0.66 0.927878
Target:  5'- cCGUUuCGGUgcGCCuGC-ACGGCUGCg -3'
miRNA:   3'- aGCGAuGCCG--UGGuCGuUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 125981 0.66 0.927878
Target:  5'- aCGCUAaGGCG-CAGCAugAGCacggUGCg -3'
miRNA:   3'- aGCGAUgCCGUgGUCGUugUCG----ACGa -5'
14195 3' -56.4 NC_003521.1 + 140331 0.66 0.927878
Target:  5'- aCGCccGCGGUGCCaccuGGCGGCGGUaGCa -3'
miRNA:   3'- aGCGa-UGCCGUGG----UCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 207531 0.66 0.927878
Target:  5'- uUCGC--CGGCauguACgAGCucucGCAGCUGCUg -3'
miRNA:   3'- -AGCGauGCCG----UGgUCGu---UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 116346 0.66 0.927878
Target:  5'- gCGCUACG--ACCAGCcGCccgacgaggccgAGCUGCUg -3'
miRNA:   3'- aGCGAUGCcgUGGUCGuUG------------UCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 144070 0.66 0.927878
Target:  5'- -aGCUgGCGGCGCUgGGCAACGuGCUGg- -3'
miRNA:   3'- agCGA-UGCCGUGG-UCGUUGU-CGACga -5'
14195 3' -56.4 NC_003521.1 + 99451 0.66 0.927878
Target:  5'- gCGgUAgGGCGCCAGaCAGC-GCUGg- -3'
miRNA:   3'- aGCgAUgCCGUGGUC-GUUGuCGACga -5'
14195 3' -56.4 NC_003521.1 + 54293 0.66 0.927878
Target:  5'- cCGUUGCGGCugGCCAcGUAgaGCAGC-GCg -3'
miRNA:   3'- aGCGAUGCCG--UGGU-CGU--UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 102455 0.66 0.927878
Target:  5'- cUGUUACGGCGCagCAGgAugAGCUgGCa -3'
miRNA:   3'- aGCGAUGCCGUG--GUCgUugUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 182404 0.66 0.927358
Target:  5'- gCGCUGCGGCuucgucaACCGccGCAucacGCGGCcGCg -3'
miRNA:   3'- aGCGAUGCCG-------UGGU--CGU----UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 42774 0.66 0.922575
Target:  5'- cUGCUGCucaaGCACCuGCccgugcagcccGGCGGCUGCa -3'
miRNA:   3'- aGCGAUGc---CGUGGuCG-----------UUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 121470 0.66 0.922575
Target:  5'- cUCGU--CGGagcCCAGCGACAGgUGCa -3'
miRNA:   3'- -AGCGauGCCgu-GGUCGUUGUCgACGa -5'
14195 3' -56.4 NC_003521.1 + 197447 0.66 0.922575
Target:  5'- -gGCcagGCGGCGCCAGC-GCAuGCUcugGCg -3'
miRNA:   3'- agCGa--UGCCGUGGUCGuUGU-CGA---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.