Results 41 - 60 of 357 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14195 | 3' | -56.4 | NC_003521.1 | + | 118266 | 0.77 | 0.374487 |
Target: 5'- aCGCgguagcCGGCACCAGCGGCGGUaGCa -3' miRNA: 3'- aGCGau----GCCGUGGUCGUUGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 70653 | 0.78 | 0.366517 |
Target: 5'- aCGCUGCGGCugguGCuGCAGCUGCUg -3' miRNA: 3'- aGCGAUGCCGugguCGuUGUCGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 129988 | 0.78 | 0.366517 |
Target: 5'- gUCGCUGCcgcuGCGCCGGCGGCGGC-GCg -3' miRNA: 3'- -AGCGAUGc---CGUGGUCGUUGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 61424 | 0.78 | 0.343315 |
Target: 5'- -aGCaUGCGGCACCugAGCgAGCGGCUGCa -3' miRNA: 3'- agCG-AUGCCGUGG--UCG-UUGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 201537 | 0.88 | 0.086647 |
Target: 5'- cCGCUACGGCGCCGGCGacguggcGCGGCUGUa -3' miRNA: 3'- aGCGAUGCCGUGGUCGU-------UGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 29126 | 0.76 | 0.460339 |
Target: 5'- gCGCUGCGcuGCuacauCCAGCAcCAGCUGCa -3' miRNA: 3'- aGCGAUGC--CGu----GGUCGUuGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 219463 | 0.76 | 0.460339 |
Target: 5'- -aGCUGCGGCACgAGCGACcauAGCaGCg -3' miRNA: 3'- agCGAUGCCGUGgUCGUUG---UCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 41999 | 0.73 | 0.623446 |
Target: 5'- gUCGCagcagcaacacgGCGGCacgacagacgccGCCGGCAccacGCAGCUGCUa -3' miRNA: 3'- -AGCGa-----------UGCCG------------UGGUCGU----UGUCGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 88252 | 0.73 | 0.605353 |
Target: 5'- gCGCUuguGCGGCGCCAGCuugaccGAguGCUGgCUg -3' miRNA: 3'- aGCGA---UGCCGUGGUCG------UUguCGAC-GA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 28832 | 0.73 | 0.605353 |
Target: 5'- gUGuCUGCGGCGCCuGGaCGACgAGCUGCg -3' miRNA: 3'- aGC-GAUGCCGUGG-UC-GUUG-UCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 138840 | 0.73 | 0.595325 |
Target: 5'- -gGCUACGGCcugcgGCCAG-AugGGCUGCa -3' miRNA: 3'- agCGAUGCCG-----UGGUCgUugUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 114946 | 0.73 | 0.595325 |
Target: 5'- -aGCUGCucGCG-CAGCGGCGGCUGCUg -3' miRNA: 3'- agCGAUGc-CGUgGUCGUUGUCGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 96780 | 0.73 | 0.585324 |
Target: 5'- gUCGCcgcCGGCAgCAGCGGCGGC-GCUc -3' miRNA: 3'- -AGCGau-GCCGUgGUCGUUGUCGaCGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 150654 | 0.73 | 0.575355 |
Target: 5'- gCGCgacgaagGCGGCucuCCGGCGGCGGCgccGCUg -3' miRNA: 3'- aGCGa------UGCCGu--GGUCGUUGUCGa--CGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 122669 | 0.74 | 0.555541 |
Target: 5'- gCGCgaucgaGGCGcCCAGCAccgACAGCUGCg -3' miRNA: 3'- aGCGaug---CCGU-GGUCGU---UGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 200082 | 0.74 | 0.535931 |
Target: 5'- -gGCUugGccuCGCCAGCAcACAGCUGCa -3' miRNA: 3'- agCGAugCc--GUGGUCGU-UGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 168546 | 0.75 | 0.516568 |
Target: 5'- gCGCggcgGCGGCGCUGGCG--GGCUGCg -3' miRNA: 3'- aGCGa---UGCCGUGGUCGUugUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 74698 | 0.75 | 0.488073 |
Target: 5'- -aGCgacgGCGGCGCC-GCGGCAGCgGCUc -3' miRNA: 3'- agCGa---UGCCGUGGuCGUUGUCGaCGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 68546 | 0.75 | 0.469493 |
Target: 5'- -gGCaGCGGCcgccaacuAUCAGCAGCAGCUGCc -3' miRNA: 3'- agCGaUGCCG--------UGGUCGUUGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 196652 | 0.76 | 0.460339 |
Target: 5'- cUCGCggaguaccgACGGCGCCAGCu---GCUGCUc -3' miRNA: 3'- -AGCGa--------UGCCGUGGUCGuuguCGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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