miRNA display CGI


Results 41 - 60 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 38711 0.7 0.744279
Target:  5'- cCGUccCGGUACCuGCGcCAGCUGCg -3'
miRNA:   3'- aGCGauGCCGUGGuCGUuGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 38927 0.67 0.892617
Target:  5'- gUCGUgGCGGCaguagaucguuaGCCAGCGACugGGCaGCa -3'
miRNA:   3'- -AGCGaUGCCG------------UGGUCGUUG--UCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 39014 0.67 0.911275
Target:  5'- gCGCUgcACGGCcgucAgCAGCGACGGCgggugugGCg -3'
miRNA:   3'- aGCGA--UGCCG----UgGUCGUUGUCGa------CGa -5'
14195 3' -56.4 NC_003521.1 + 39149 0.66 0.932951
Target:  5'- gUGCUGC--CACCGGCGgcGCAGCUcGCg -3'
miRNA:   3'- aGCGAUGccGUGGUCGU--UGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 40494 0.67 0.907706
Target:  5'- gCGCcACGGCGCCGcagcGCAucucgaacuccuccaGCAGCgGCg -3'
miRNA:   3'- aGCGaUGCCGUGGU----CGU---------------UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 41504 0.69 0.816822
Target:  5'- aCGCcaGCGaCACCAGUAACGGCaGCg -3'
miRNA:   3'- aGCGa-UGCcGUGGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 41947 0.68 0.849467
Target:  5'- -gGCUGCGacaguGCAuCCGGgGGCAGCUGUUc -3'
miRNA:   3'- agCGAUGC-----CGU-GGUCgUUGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 41999 0.73 0.623446
Target:  5'- gUCGCagcagcaacacgGCGGCacgacagacgccGCCGGCAccacGCAGCUGCUa -3'
miRNA:   3'- -AGCGa-----------UGCCG------------UGGUCGU----UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 42578 0.75 0.497492
Target:  5'- aUCGCUGCGGCgucaGCCAGCuauuGAUAGC-GCg -3'
miRNA:   3'- -AGCGAUGCCG----UGGUCG----UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 42774 0.66 0.922575
Target:  5'- cUGCUGCucaaGCACCuGCccgugcagcccGGCGGCUGCa -3'
miRNA:   3'- aGCGAUGc---CGUGGuCG-----------UUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 43945 0.68 0.871976
Target:  5'- -gGCgACGauCACCGGCGGCuGCUGCUc -3'
miRNA:   3'- agCGaUGCc-GUGGUCGUUGuCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 46981 0.66 0.932951
Target:  5'- gUCGCUGCGGUA-CAGCAugAuGgaGUUc -3'
miRNA:   3'- -AGCGAUGCCGUgGUCGUugU-CgaCGA- -5'
14195 3' -56.4 NC_003521.1 + 47637 0.78 0.335819
Target:  5'- cCGUgacgGCGGCuCUGGCGGCAGCUGCg -3'
miRNA:   3'- aGCGa---UGCCGuGGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 47982 0.66 0.920938
Target:  5'- gUCGCUucucguccacggacGCGcCGCCgGGCuucuGCGGCUGCUg -3'
miRNA:   3'- -AGCGA--------------UGCcGUGG-UCGu---UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 50478 0.66 0.927878
Target:  5'- aUGCUGCccGGCGCguGCcACAGCgugucgGCg -3'
miRNA:   3'- aGCGAUG--CCGUGguCGuUGUCGa-----CGa -5'
14195 3' -56.4 NC_003521.1 + 52241 0.66 0.942404
Target:  5'- -gGCUACaguugGGCAgCGGCAgGCGGUUGUUg -3'
miRNA:   3'- agCGAUG-----CCGUgGUCGU-UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 52676 0.73 0.595325
Target:  5'- -aGCaGCGGCACCGGCAGCgucGGCggUGCc -3'
miRNA:   3'- agCGaUGCCGUGGUCGUUG---UCG--ACGa -5'
14195 3' -56.4 NC_003521.1 + 53376 0.7 0.75377
Target:  5'- cCGCUgacGCGGCgcACCAGCuucuGCAGCuccuUGCg -3'
miRNA:   3'- aGCGA---UGCCG--UGGUCGu---UGUCG----ACGa -5'
14195 3' -56.4 NC_003521.1 + 53508 0.7 0.744279
Target:  5'- cUGCUGCGGCGUC-GCAGCGGCcgauggUGCUg -3'
miRNA:   3'- aGCGAUGCCGUGGuCGUUGUCG------ACGA- -5'
14195 3' -56.4 NC_003521.1 + 54206 0.73 0.592322
Target:  5'- cCGCUGCuGGCcggugguCCGGCAguaccgacugccggGCGGCUGCUa -3'
miRNA:   3'- aGCGAUG-CCGu------GGUCGU--------------UGUCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.