miRNA display CGI


Results 41 - 60 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 87238 0.66 0.937792
Target:  5'- gCGCUGCuGCugCAGgugguggAGCGGCUGUg -3'
miRNA:   3'- aGCGAUGcCGugGUCg------UUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 36286 0.66 0.937792
Target:  5'- gCGCUGC-GCACCucggaccGCGACAacuacgggcGCUGCg -3'
miRNA:   3'- aGCGAUGcCGUGGu------CGUUGU---------CGACGa -5'
14195 3' -56.4 NC_003521.1 + 197447 0.66 0.922575
Target:  5'- -gGCcagGCGGCGCCAGC-GCAuGCUcugGCg -3'
miRNA:   3'- agCGa--UGCCGUGGUCGuUGU-CGA---CGa -5'
14195 3' -56.4 NC_003521.1 + 141452 0.66 0.942404
Target:  5'- uUCGCcgACGacCACCAGCAacaACAGCaGCc -3'
miRNA:   3'- -AGCGa-UGCc-GUGGUCGU---UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 103451 0.66 0.937792
Target:  5'- gUCGCgGCGGUugCGcGCcACGGCguagGCg -3'
miRNA:   3'- -AGCGaUGCCGugGU-CGuUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 191254 0.66 0.927878
Target:  5'- gCGCcGCGGC-CCAcGCGGCAGgUGgUg -3'
miRNA:   3'- aGCGaUGCCGuGGU-CGUUGUCgACgA- -5'
14195 3' -56.4 NC_003521.1 + 152298 0.66 0.927878
Target:  5'- cCGUUuCGGUgcGCCuGC-ACGGCUGCg -3'
miRNA:   3'- aGCGAuGCCG--UGGuCGuUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 104218 0.66 0.922032
Target:  5'- cUGCUGCaGC-CCAGCGaggacguGgAGCUGCg -3'
miRNA:   3'- aGCGAUGcCGuGGUCGU-------UgUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 52241 0.66 0.942404
Target:  5'- -gGCUACaguugGGCAgCGGCAgGCGGUUGUUg -3'
miRNA:   3'- agCGAUG-----CCGUgGUCGU-UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 75618 0.66 0.942404
Target:  5'- gCGCcACGGCucagucGCCgacgaugacgacGGCAACAGCgGCg -3'
miRNA:   3'- aGCGaUGCCG------UGG------------UCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 152355 0.66 0.937792
Target:  5'- aCGCUGCucuGGgGCCGGCcggGGCGGC-GCg -3'
miRNA:   3'- aGCGAUG---CCgUGGUCG---UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 74776 0.66 0.937792
Target:  5'- -gGCUggaguaugacgACGGCGgCAGCggUAGCgGCg -3'
miRNA:   3'- agCGA-----------UGCCGUgGUCGuuGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 198213 0.66 0.942404
Target:  5'- -gGCgACGGCGCCGcCGGCGGCcGUg -3'
miRNA:   3'- agCGaUGCCGUGGUcGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 105829 0.66 0.937792
Target:  5'- aCGCcACGGCcuGCCccuGCuacCGGCUGCa -3'
miRNA:   3'- aGCGaUGCCG--UGGu--CGuu-GUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 50478 0.66 0.927878
Target:  5'- aUGCUGCccGGCGCguGCcACAGCgugucgGCg -3'
miRNA:   3'- aGCGAUG--CCGUGguCGuUGUCGa-----CGa -5'
14195 3' -56.4 NC_003521.1 + 168829 0.66 0.932951
Target:  5'- -aGCUG-GGCcCCAGCG--AGCUGCg -3'
miRNA:   3'- agCGAUgCCGuGGUCGUugUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 47982 0.66 0.920938
Target:  5'- gUCGCUucucguccacggacGCGcCGCCgGGCuucuGCGGCUGCUg -3'
miRNA:   3'- -AGCGA--------------UGCcGUGG-UCGu---UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 113796 0.66 0.937792
Target:  5'- gCGCgACgGGCACC-GCGGCGGCgucgucggGCa -3'
miRNA:   3'- aGCGaUG-CCGUGGuCGUUGUCGa-------CGa -5'
14195 3' -56.4 NC_003521.1 + 76541 0.66 0.932951
Target:  5'- cUGCUGCGGUggcuguCCAGgAGCGGCgguccGCg -3'
miRNA:   3'- aGCGAUGCCGu-----GGUCgUUGUCGa----CGa -5'
14195 3' -56.4 NC_003521.1 + 207531 0.66 0.927878
Target:  5'- uUCGC--CGGCauguACgAGCucucGCAGCUGCUg -3'
miRNA:   3'- -AGCGauGCCG----UGgUCGu---UGUCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.