miRNA display CGI


Results 41 - 60 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 190539 0.74 0.545708
Target:  5'- gUGCgGCGGCAgCAGCGGCggacccGGCUGCa -3'
miRNA:   3'- aGCGaUGCCGUgGUCGUUG------UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 122669 0.74 0.555541
Target:  5'- gCGCgaucgaGGCGcCCAGCAccgACAGCUGCg -3'
miRNA:   3'- aGCGaug---CCGU-GGUCGU---UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 357 0.74 0.565425
Target:  5'- cUGCcggagGCGGCGCCuGCGACcGCUGCc -3'
miRNA:   3'- aGCGa----UGCCGUGGuCGUUGuCGACGa -5'
14195 3' -56.4 NC_003521.1 + 150654 0.73 0.575355
Target:  5'- gCGCgacgaagGCGGCucuCCGGCGGCGGCgccGCUg -3'
miRNA:   3'- aGCGa------UGCCGu--GGUCGUUGUCGa--CGA- -5'
14195 3' -56.4 NC_003521.1 + 121279 0.73 0.575355
Target:  5'- aCGC-ACGGCGCCgAGguGguGCUGCg -3'
miRNA:   3'- aGCGaUGCCGUGG-UCguUguCGACGa -5'
14195 3' -56.4 NC_003521.1 + 106933 0.73 0.585324
Target:  5'- aCGUUGCuGCugUAGCAccgauuGCAGCUGCUc -3'
miRNA:   3'- aGCGAUGcCGugGUCGU------UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 96780 0.73 0.585324
Target:  5'- gUCGCcgcCGGCAgCAGCGGCGGC-GCUc -3'
miRNA:   3'- -AGCGau-GCCGUgGUCGUUGUCGaCGA- -5'
14195 3' -56.4 NC_003521.1 + 54206 0.73 0.592322
Target:  5'- cCGCUGCuGGCcggugguCCGGCAguaccgacugccggGCGGCUGCUa -3'
miRNA:   3'- aGCGAUG-CCGu------GGUCGU--------------UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 123635 0.73 0.595325
Target:  5'- cCGCcucggGCGGCGgCAGCGACGGCggguuagGCUu -3'
miRNA:   3'- aGCGa----UGCCGUgGUCGUUGUCGa------CGA- -5'
14195 3' -56.4 NC_003521.1 + 114946 0.73 0.595325
Target:  5'- -aGCUGCucGCG-CAGCGGCGGCUGCUg -3'
miRNA:   3'- agCGAUGc-CGUgGUCGUUGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 138840 0.73 0.595325
Target:  5'- -gGCUACGGCcugcgGCCAG-AugGGCUGCa -3'
miRNA:   3'- agCGAUGCCG-----UGGUCgUugUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 52676 0.73 0.595325
Target:  5'- -aGCaGCGGCACCGGCAGCgucGGCggUGCc -3'
miRNA:   3'- agCGaUGCCGUGGUCGUUG---UCG--ACGa -5'
14195 3' -56.4 NC_003521.1 + 113880 0.73 0.595325
Target:  5'- cCGCgGCGGCA-CAGCGACagcagguaggcgAGCUGCUg -3'
miRNA:   3'- aGCGaUGCCGUgGUCGUUG------------UCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 187321 0.73 0.605353
Target:  5'- cCGCUGCGaCGCC-GCAGCAGCgGCc -3'
miRNA:   3'- aGCGAUGCcGUGGuCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 88252 0.73 0.605353
Target:  5'- gCGCUuguGCGGCGCCAGCuugaccGAguGCUGgCUg -3'
miRNA:   3'- aGCGA---UGCCGUGGUCG------UUguCGAC-GA- -5'
14195 3' -56.4 NC_003521.1 + 28832 0.73 0.605353
Target:  5'- gUGuCUGCGGCGCCuGGaCGACgAGCUGCg -3'
miRNA:   3'- aGC-GAUGCCGUGG-UC-GUUG-UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 20298 0.73 0.609369
Target:  5'- cUCGC--CGGCGCCAuGCAGCAccaggaggccaccacGCUGCUg -3'
miRNA:   3'- -AGCGauGCCGUGGU-CGUUGU---------------CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 161230 0.73 0.615399
Target:  5'- uUCGaugGCGGCGgCAGCGGCAGUaGCg -3'
miRNA:   3'- -AGCga-UGCCGUgGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 140558 0.73 0.615399
Target:  5'- cUGCUgcgGCGGCGgCGGCGACAGCUcGUc -3'
miRNA:   3'- aGCGA---UGCCGUgGUCGUUGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 41999 0.73 0.623446
Target:  5'- gUCGCagcagcaacacgGCGGCacgacagacgccGCCGGCAccacGCAGCUGCUa -3'
miRNA:   3'- -AGCGa-----------UGCCG------------UGGUCGU----UGUCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.