miRNA display CGI


Results 21 - 40 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 17465 0.76 0.441431
Target:  5'- gCGCUcggaggagagacgACGGCACCGGUAGCGGCgccGCc -3'
miRNA:   3'- aGCGA-------------UGCCGUGGUCGUUGUCGa--CGa -5'
14195 3' -56.4 NC_003521.1 + 75534 0.76 0.442321
Target:  5'- -aGCUgugucaguucaGCGGCGCCGGCGGCGGCUacGCc -3'
miRNA:   3'- agCGA-----------UGCCGUGGUCGUUGUCGA--CGa -5'
14195 3' -56.4 NC_003521.1 + 76355 0.76 0.442321
Target:  5'- -gGCUGCGGCGgCGGCAGCGGCgaccGUg -3'
miRNA:   3'- agCGAUGCCGUgGUCGUUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 84674 0.76 0.451281
Target:  5'- gUCGCaGCaGCGCCAGCAGCuGCgUGCa -3'
miRNA:   3'- -AGCGaUGcCGUGGUCGUUGuCG-ACGa -5'
14195 3' -56.4 NC_003521.1 + 186842 0.76 0.451281
Target:  5'- cUGCgaaugGCGGC-CCAGCGGCGGCgUGCa -3'
miRNA:   3'- aGCGa----UGCCGuGGUCGUUGUCG-ACGa -5'
14195 3' -56.4 NC_003521.1 + 29126 0.76 0.460339
Target:  5'- gCGCUGCGcuGCuacauCCAGCAcCAGCUGCa -3'
miRNA:   3'- aGCGAUGC--CGu----GGUCGUuGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 219463 0.76 0.460339
Target:  5'- -aGCUGCGGCACgAGCGACcauAGCaGCg -3'
miRNA:   3'- agCGAUGCCGUGgUCGUUG---UCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 196652 0.76 0.460339
Target:  5'- cUCGCggaguaccgACGGCGCCAGCu---GCUGCUc -3'
miRNA:   3'- -AGCGa--------UGCCGUGGUCGuuguCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 68546 0.75 0.469493
Target:  5'- -gGCaGCGGCcgccaacuAUCAGCAGCAGCUGCc -3'
miRNA:   3'- agCGaUGCCG--------UGGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 74698 0.75 0.488073
Target:  5'- -aGCgacgGCGGCGCC-GCGGCAGCgGCUc -3'
miRNA:   3'- agCGa---UGCCGUGGuCGUUGUCGaCGA- -5'
14195 3' -56.4 NC_003521.1 + 42578 0.75 0.497492
Target:  5'- aUCGCUGCGGCgucaGCCAGCuauuGAUAGC-GCg -3'
miRNA:   3'- -AGCGAUGCCG----UGGUCG----UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 86167 0.75 0.516568
Target:  5'- cUCGCUGcCGGCcucgGCCAGCGGCAcguGCUuGCUg -3'
miRNA:   3'- -AGCGAU-GCCG----UGGUCGUUGU---CGA-CGA- -5'
14195 3' -56.4 NC_003521.1 + 168546 0.75 0.516568
Target:  5'- gCGCggcgGCGGCGCUGGCG--GGCUGCg -3'
miRNA:   3'- aGCGa---UGCCGUGGUCGUugUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 240404 0.74 0.535931
Target:  5'- -gGCUugGccuCGCCAGCAcACAGCUGCa -3'
miRNA:   3'- agCGAugCc--GUGGUCGU-UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 200082 0.74 0.535931
Target:  5'- -gGCUugGccuCGCCAGCAcACAGCUGCa -3'
miRNA:   3'- agCGAugCc--GUGGUCGU-UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 183918 0.74 0.535931
Target:  5'- gUGCUGCGGCGCUgucGCGACGGCcaGCUc -3'
miRNA:   3'- aGCGAUGCCGUGGu--CGUUGUCGa-CGA- -5'
14195 3' -56.4 NC_003521.1 + 190539 0.74 0.545708
Target:  5'- gUGCgGCGGCAgCAGCGGCggacccGGCUGCa -3'
miRNA:   3'- aGCGaUGCCGUgGUCGUUG------UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 75167 0.74 0.545708
Target:  5'- aCGC-AUGGUGCCAGCGcgGCGuGCUGCUg -3'
miRNA:   3'- aGCGaUGCCGUGGUCGU--UGU-CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 16499 0.74 0.545708
Target:  5'- aCGCUACGaGCACgGGCuGCGGCgcucgGCUc -3'
miRNA:   3'- aGCGAUGC-CGUGgUCGuUGUCGa----CGA- -5'
14195 3' -56.4 NC_003521.1 + 2478 0.74 0.545708
Target:  5'- aCGCgACGGCGCCGGC--CAGCUGa- -3'
miRNA:   3'- aGCGaUGCCGUGGUCGuuGUCGACga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.