miRNA display CGI


Results 21 - 40 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 21591 0.66 0.942404
Target:  5'- gCGCUGCugaccuGGguCCuGCAACucuGCUGCc -3'
miRNA:   3'- aGCGAUG------CCguGGuCGUUGu--CGACGa -5'
14195 3' -56.4 NC_003521.1 + 21669 0.7 0.75377
Target:  5'- aCGCUGCGGCGCCuGCugguACc-CUGCc -3'
miRNA:   3'- aGCGAUGCCGUGGuCGu---UGucGACGa -5'
14195 3' -56.4 NC_003521.1 + 21709 0.66 0.944185
Target:  5'- gCGCUACGGCGCUgcucauguGGCuggugacgaugcccgAACAggucucGCUGCUc -3'
miRNA:   3'- aGCGAUGCCGUGG--------UCG---------------UUGU------CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 25378 0.67 0.885953
Target:  5'- cUCGgccUGGCGCCAGCAcccGCGGCUcuGCUu -3'
miRNA:   3'- -AGCgauGCCGUGGUCGU---UGUCGA--CGA- -5'
14195 3' -56.4 NC_003521.1 + 25786 0.7 0.744279
Target:  5'- -gGCUccacGCGGCugCAGCccaccauCAGCUGCc -3'
miRNA:   3'- agCGA----UGCCGugGUCGuu-----GUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 26246 0.69 0.816822
Target:  5'- gUCGCgcACGGaaCGCCAGCG-CuGCUGCa -3'
miRNA:   3'- -AGCGa-UGCC--GUGGUCGUuGuCGACGa -5'
14195 3' -56.4 NC_003521.1 + 27979 0.71 0.714292
Target:  5'- gCGCUcacggccACGGCGgCAGCGugAGCgGCa -3'
miRNA:   3'- aGCGA-------UGCCGUgGUCGUugUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 28235 0.7 0.778853
Target:  5'- cUCGCUgacggaggaagaagACGGCGCCgagAGgAACAGCgGCg -3'
miRNA:   3'- -AGCGA--------------UGCCGUGG---UCgUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 28832 0.73 0.605353
Target:  5'- gUGuCUGCGGCGCCuGGaCGACgAGCUGCg -3'
miRNA:   3'- aGC-GAUGCCGUGG-UC-GUUG-UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 29126 0.76 0.460339
Target:  5'- gCGCUGCGcuGCuacauCCAGCAcCAGCUGCa -3'
miRNA:   3'- aGCGAUGC--CGu----GGUCGUuGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 30324 0.66 0.937792
Target:  5'- gCGCUccagcaACuGCGCCAGCGAguCGGCgGCg -3'
miRNA:   3'- aGCGA------UGcCGUGGUCGUU--GUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 30424 0.67 0.911275
Target:  5'- aCGCUGCGGUcCCAGCugaacauguccaGGCGGCcgagggUGCc -3'
miRNA:   3'- aGCGAUGCCGuGGUCG------------UUGUCG------ACGa -5'
14195 3' -56.4 NC_003521.1 + 30969 0.89 0.072295
Target:  5'- gCGCU-CGGCACgCAGCAGCAGCUGCg -3'
miRNA:   3'- aGCGAuGCCGUG-GUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 32597 0.67 0.91704
Target:  5'- cUGCUGUGGCucuggugucuguACCuGCGACuGCUGCa -3'
miRNA:   3'- aGCGAUGCCG------------UGGuCGUUGuCGACGa -5'
14195 3' -56.4 NC_003521.1 + 33259 0.7 0.75377
Target:  5'- aCGCgcagcaggcCGGCGCgAucguGCAGCAGCUGCg -3'
miRNA:   3'- aGCGau-------GCCGUGgU----CGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 33785 0.67 0.905282
Target:  5'- -gGcCUGCGGC-CCAGCcaccGACuGCUGUUg -3'
miRNA:   3'- agC-GAUGCCGuGGUCG----UUGuCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 33940 0.66 0.937792
Target:  5'- cUGCUguGCGGCguGCgCGGCgAGCAGCUGg- -3'
miRNA:   3'- aGCGA--UGCCG--UG-GUCG-UUGUCGACga -5'
14195 3' -56.4 NC_003521.1 + 34452 0.66 0.937318
Target:  5'- gCGCUGCGGgccugggggucguCGCCgcaGGcCAGCAGCUcGCg -3'
miRNA:   3'- aGCGAUGCC-------------GUGG---UC-GUUGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 36286 0.66 0.937792
Target:  5'- gCGCUGC-GCACCucggaccGCGACAacuacgggcGCUGCg -3'
miRNA:   3'- aGCGAUGcCGUGGu------CGUUGU---------CGACGa -5'
14195 3' -56.4 NC_003521.1 + 36770 0.68 0.857169
Target:  5'- gCGaCUGCGGCgACUGGCAgggccACGcGCUGCg -3'
miRNA:   3'- aGC-GAUGCCG-UGGUCGU-----UGU-CGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.