miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 357 0.74 0.565425
Target:  5'- cUGCcggagGCGGCGCCuGCGACcGCUGCc -3'
miRNA:   3'- aGCGa----UGCCGUGGuCGUUGuCGACGa -5'
14195 3' -56.4 NC_003521.1 + 1309 0.88 0.086647
Target:  5'- cCGCUACGGCGCCGGCGacguggcGCGGCUGUa -3'
miRNA:   3'- aGCGAUGCCGUGGUCGU-------UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 1449 0.69 0.833498
Target:  5'- -aGCUGCGcCGCCGGUGGCAGCacacggGCa -3'
miRNA:   3'- agCGAUGCcGUGGUCGUUGUCGa-----CGa -5'
14195 3' -56.4 NC_003521.1 + 2320 0.71 0.695575
Target:  5'- cUGCUGC-GCGCCGGCcuccuGgGGCUGCUg -3'
miRNA:   3'- aGCGAUGcCGUGGUCGu----UgUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 2478 0.74 0.545708
Target:  5'- aCGCgACGGCGCCGGC--CAGCUGa- -3'
miRNA:   3'- aGCGaUGCCGUGGUCGuuGUCGACga -5'
14195 3' -56.4 NC_003521.1 + 8465 0.77 0.390776
Target:  5'- cCGCUucGCGGUGCCGccGCGACuGCUGCUa -3'
miRNA:   3'- aGCGA--UGCCGUGGU--CGUUGuCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 8911 0.68 0.864674
Target:  5'- -gGCUACGGCGCgGGagaagAGCcGCUGCc -3'
miRNA:   3'- agCGAUGCCGUGgUCg----UUGuCGACGa -5'
14195 3' -56.4 NC_003521.1 + 12687 0.67 0.911275
Target:  5'- cCGCgacCGGUucuacuCCAGgacCGACGGCUGCUa -3'
miRNA:   3'- aGCGau-GCCGu-----GGUC---GUUGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 12921 0.68 0.864674
Target:  5'- gCGCUggugGCGGgACCagggccgggaggAGCAACAucuGCUGCUg -3'
miRNA:   3'- aGCGA----UGCCgUGG------------UCGUUGU---CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 14600 0.72 0.649605
Target:  5'- -gGCUACGGCACggugauuaugCGgcugaugaagaccguGCAGCAGCUGCa -3'
miRNA:   3'- agCGAUGCCGUG----------GU---------------CGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 14926 0.68 0.849467
Target:  5'- gCGCUuCGaGCGCgAGCGGCAGC-GCc -3'
miRNA:   3'- aGCGAuGC-CGUGgUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 15310 0.69 0.833498
Target:  5'- aCGCgcgACGGCGCCgAGCGGgugauCAGCgcGCUg -3'
miRNA:   3'- aGCGa--UGCCGUGG-UCGUU-----GUCGa-CGA- -5'
14195 3' -56.4 NC_003521.1 + 16499 0.74 0.545708
Target:  5'- aCGCUACGaGCACgGGCuGCGGCgcucgGCUc -3'
miRNA:   3'- aGCGAUGC-CGUGgUCGuUGUCGa----CGA- -5'
14195 3' -56.4 NC_003521.1 + 16993 0.7 0.744279
Target:  5'- cUGCUGCaGUAUcgaCAGCAGgAGCUGCUg -3'
miRNA:   3'- aGCGAUGcCGUG---GUCGUUgUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 17465 0.76 0.441431
Target:  5'- gCGCUcggaggagagacgACGGCACCGGUAGCGGCgccGCc -3'
miRNA:   3'- aGCGA-------------UGCCGUGGUCGUUGUCGa--CGa -5'
14195 3' -56.4 NC_003521.1 + 17638 0.66 0.937792
Target:  5'- gCGCUGCGGagcuacguaCGCCAGCAcCGGg-GCa -3'
miRNA:   3'- aGCGAUGCC---------GUGGUCGUuGUCgaCGa -5'
14195 3' -56.4 NC_003521.1 + 18732 0.67 0.905282
Target:  5'- aCGCUGcCGGCGCUgcagGGCG--GGCUGUg -3'
miRNA:   3'- aGCGAU-GCCGUGG----UCGUugUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 19168 0.67 0.911275
Target:  5'- -aGC-ACGGCGCUGGUGGCcgacgugcacgAGCUGCa -3'
miRNA:   3'- agCGaUGCCGUGGUCGUUG-----------UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 19473 0.67 0.91704
Target:  5'- gUCGCUGCGcgGCCAGguGCAGgUGg- -3'
miRNA:   3'- -AGCGAUGCcgUGGUCguUGUCgACga -5'
14195 3' -56.4 NC_003521.1 + 20298 0.73 0.609369
Target:  5'- cUCGC--CGGCGCCAuGCAGCAccaggaggccaccacGCUGCUg -3'
miRNA:   3'- -AGCGauGCCGUGGU-CGUUGU---------------CGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.