miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 240404 0.74 0.535931
Target:  5'- -gGCUugGccuCGCCAGCAcACAGCUGCa -3'
miRNA:   3'- agCGAugCc--GUGGUCGU-UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 239377 0.66 0.932951
Target:  5'- gUGCUGC--CACCGGCGgcGCAGCUcGCg -3'
miRNA:   3'- aGCGAUGccGUGGUCGU--UGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 239242 0.67 0.911275
Target:  5'- gCGCUgcACGGCcgucAgCAGCGACGGCgggugugGCg -3'
miRNA:   3'- aGCGA--UGCCG----UgGUCGUUGUCGa------CGa -5'
14195 3' -56.4 NC_003521.1 + 239155 0.67 0.892617
Target:  5'- gUCGUgGCGGCaguagaucguuaGCCAGCGACugGGCaGCa -3'
miRNA:   3'- -AGCGaUGCCG------------UGGUCGUUG--UCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 238938 0.7 0.744279
Target:  5'- cCGUccCGGUACCuGCGcCAGCUGCg -3'
miRNA:   3'- aGCGauGCCGUGGuCGUuGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 233155 0.67 0.883911
Target:  5'- cUGCUugGGCACCGcuguccgcgccgccGUGGCGGCcGCc -3'
miRNA:   3'- aGCGAugCCGUGGU--------------CGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 232361 0.68 0.852571
Target:  5'- gUCGCgGCGGCACCgcgaAGCGgagguccaccgucucGCgcuGGCUGCg -3'
miRNA:   3'- -AGCGaUGCCGUGG----UCGU---------------UG---UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 231892 0.68 0.864674
Target:  5'- gUUGCUGgGuaACCuGCGGCAGCgGCUc -3'
miRNA:   3'- -AGCGAUgCcgUGGuCGUUGUCGaCGA- -5'
14195 3' -56.4 NC_003521.1 + 228985 0.71 0.715271
Target:  5'- gCGCggGCGGCgcaggACCGGCAGCAcGgaGCUa -3'
miRNA:   3'- aGCGa-UGCCG-----UGGUCGUUGU-CgaCGA- -5'
14195 3' -56.4 NC_003521.1 + 227607 0.67 0.890641
Target:  5'- -gGCUugGGCGCCGGUcggcccuccaacacGGCGGCccgaGCg -3'
miRNA:   3'- agCGAugCCGUGGUCG--------------UUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 226850 0.68 0.871976
Target:  5'- cCGCgccggGCaggcccaucagGGCGuCCAGCGaggGCAGCUGCg -3'
miRNA:   3'- aGCGa----UG-----------CCGU-GGUCGU---UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 224888 0.69 0.833498
Target:  5'- gUGCU-UGGCGCaCAGCAGCAGaaucucCUGCg -3'
miRNA:   3'- aGCGAuGCCGUG-GUCGUUGUC------GACGa -5'
14195 3' -56.4 NC_003521.1 + 224029 0.68 0.867619
Target:  5'- gCGCcccaUAaugGGCGCCGGCAGCAucugaaaaccgaccuGCUGCa -3'
miRNA:   3'- aGCG----AUg--CCGUGGUCGUUGU---------------CGACGa -5'
14195 3' -56.4 NC_003521.1 + 223847 0.71 0.72502
Target:  5'- gUCcCUGCGGCugCuGCuGCGGCUGUc -3'
miRNA:   3'- -AGcGAUGCCGugGuCGuUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 222669 0.67 0.892617
Target:  5'- aCGCUGCccaGCAUgAGCAGCGGCU-Cg -3'
miRNA:   3'- aGCGAUGc--CGUGgUCGUUGUCGAcGa -5'
14195 3' -56.4 NC_003521.1 + 222094 0.71 0.695575
Target:  5'- cCGCccUGCaGCGCCGGCAGCGucucgaggcGCUGCg -3'
miRNA:   3'- aGCG--AUGcCGUGGUCGUUGU---------CGACGa -5'
14195 3' -56.4 NC_003521.1 + 222050 0.68 0.879071
Target:  5'- -gGCggGgGGCACCAGCcgucGCAGCaGCg -3'
miRNA:   3'- agCGa-UgCCGUGGUCGu---UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 221911 0.66 0.934427
Target:  5'- gCGC-GCGGCGCCAcccuucggggcugccGCGGCGccucguccucgucGCUGCUc -3'
miRNA:   3'- aGCGaUGCCGUGGU---------------CGUUGU-------------CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 220903 0.68 0.857169
Target:  5'- cUGCUGCGGCGuCCAGgacCAcCAGCcGCUc -3'
miRNA:   3'- aGCGAUGCCGU-GGUC---GUuGUCGaCGA- -5'
14195 3' -56.4 NC_003521.1 + 220562 0.7 0.772432
Target:  5'- cCGCUGaGcGUACCGGCGACGGCUuaUg -3'
miRNA:   3'- aGCGAUgC-CGUGGUCGUUGUCGAcgA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.