miRNA display CGI


Results 21 - 40 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 220061 0.66 0.942404
Target:  5'- aCGCcaggaaggACaGCACCAGCAgcgcguacacGCAGCUGa- -3'
miRNA:   3'- aGCGa-------UGcCGUGGUCGU----------UGUCGACga -5'
14195 3' -56.4 NC_003521.1 + 219769 0.67 0.911275
Target:  5'- gUCGcCUACGuCGCCuuuGCGACAGCgGUg -3'
miRNA:   3'- -AGC-GAUGCcGUGGu--CGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 219463 0.76 0.460339
Target:  5'- -aGCUGCGGCACgAGCGACcauAGCaGCg -3'
miRNA:   3'- agCGAUGCCGUGgUCGUUG---UCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 219062 0.71 0.715271
Target:  5'- aCGCcACGGCGCCcagguGCAugAGCaGCg -3'
miRNA:   3'- aGCGaUGCCGUGGu----CGUugUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 218415 0.7 0.75377
Target:  5'- aCGCcGCGcaGCaugGCCAGCGACAGCgGCg -3'
miRNA:   3'- aGCGaUGC--CG---UGGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 214652 0.67 0.91704
Target:  5'- cCGUgAUGGCcgucuCCAGCAGCAGCaGUc -3'
miRNA:   3'- aGCGaUGCCGu----GGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 212487 0.69 0.833498
Target:  5'- cUCGCUAuCGGcCACCGGCGguccGCAGgCcGCg -3'
miRNA:   3'- -AGCGAU-GCC-GUGGUCGU----UGUC-GaCGa -5'
14195 3' -56.4 NC_003521.1 + 209457 0.66 0.927878
Target:  5'- aUGCUGucCGGCgACguGCAGCGGCUcaucagGCUg -3'
miRNA:   3'- aGCGAU--GCCG-UGguCGUUGUCGA------CGA- -5'
14195 3' -56.4 NC_003521.1 + 209105 0.67 0.91704
Target:  5'- -gGCcGCGGCGucCCAGCAcgcgcACAuGCUGCc -3'
miRNA:   3'- agCGaUGCCGU--GGUCGU-----UGU-CGACGa -5'
14195 3' -56.4 NC_003521.1 + 208806 0.69 0.82441
Target:  5'- -gGC-ACGcGCACCAauuaccuGCGGCAGCUGUg -3'
miRNA:   3'- agCGaUGC-CGUGGU-------CGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 207936 0.67 0.905282
Target:  5'- -gGC-ACGGCGgCAGCAcCGGCgGCg -3'
miRNA:   3'- agCGaUGCCGUgGUCGUuGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 207568 0.68 0.857169
Target:  5'- aUCGCgcCGGCcugcuggcguguGCCAGCucaacgcCGGCUGCa -3'
miRNA:   3'- -AGCGauGCCG------------UGGUCGuu-----GUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 207531 0.66 0.927878
Target:  5'- uUCGC--CGGCauguACgAGCucucGCAGCUGCUg -3'
miRNA:   3'- -AGCGauGCCG----UGgUCGu---UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 207122 0.71 0.695575
Target:  5'- gCGCUugGGCGgaguCCAGCuGCAGCguuacgUGCg -3'
miRNA:   3'- aGCGAugCCGU----GGUCGuUGUCG------ACGa -5'
14195 3' -56.4 NC_003521.1 + 205331 0.8 0.267478
Target:  5'- aCcCUACGGCGCCuccucggcGGCGGCAGCUGCg -3'
miRNA:   3'- aGcGAUGCCGUGG--------UCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 202548 0.71 0.695575
Target:  5'- cUGCUGC-GCGCCGGCcuccuGgGGCUGCUg -3'
miRNA:   3'- aGCGAUGcCGUGGUCGu----UgUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 201676 0.69 0.833498
Target:  5'- -aGCUGCGcCGCCGGUGGCAGCacacggGCa -3'
miRNA:   3'- agCGAUGCcGUGGUCGUUGUCGa-----CGa -5'
14195 3' -56.4 NC_003521.1 + 201537 0.88 0.086647
Target:  5'- cCGCUACGGCGCCGGCGacguggcGCGGCUGUa -3'
miRNA:   3'- aGCGAUGCCGUGGUCGU-------UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 201376 0.67 0.885274
Target:  5'- aCGCggcccuCGGCGCCGGgcucggcCGGCAGCgGCa -3'
miRNA:   3'- aGCGau----GCCGUGGUC-------GUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 200558 0.68 0.864674
Target:  5'- gCGUgcaaACGGCcaACCaAGCGugAGCUGCc -3'
miRNA:   3'- aGCGa---UGCCG--UGG-UCGUugUCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.