miRNA display CGI


Results 21 - 40 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 140331 0.66 0.927878
Target:  5'- aCGCccGCGGUGCCaccuGGCGGCGGUaGCa -3'
miRNA:   3'- aGCGa-UGCCGUGG----UCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 221911 0.66 0.934427
Target:  5'- gCGC-GCGGCGCCAcccuucggggcugccGCGGCGccucguccucgucGCUGCUc -3'
miRNA:   3'- aGCGaUGCCGUGGU---------------CGUUGU-------------CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 46981 0.66 0.932951
Target:  5'- gUCGCUGCGGUA-CAGCAugAuGgaGUUc -3'
miRNA:   3'- -AGCGAUGCCGUgGUCGUugU-CgaCGA- -5'
14195 3' -56.4 NC_003521.1 + 99451 0.66 0.927878
Target:  5'- gCGgUAgGGCGCCAGaCAGC-GCUGg- -3'
miRNA:   3'- aGCgAUgCCGUGGUC-GUUGuCGACga -5'
14195 3' -56.4 NC_003521.1 + 36286 0.66 0.937792
Target:  5'- gCGCUGC-GCACCucggaccGCGACAacuacgggcGCUGCg -3'
miRNA:   3'- aGCGAUGcCGUGGu------CGUUGU---------CGACGa -5'
14195 3' -56.4 NC_003521.1 + 152298 0.66 0.927878
Target:  5'- cCGUUuCGGUgcGCCuGC-ACGGCUGCg -3'
miRNA:   3'- aGCGAuGCCG--UGGuCGuUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 110099 0.66 0.927878
Target:  5'- gCGCUGCGGUcaaGCgGGCucuGACAGC-GCc -3'
miRNA:   3'- aGCGAUGCCG---UGgUCG---UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 220061 0.66 0.942404
Target:  5'- aCGCcaggaaggACaGCACCAGCAgcgcguacacGCAGCUGa- -3'
miRNA:   3'- aGCGa-------UGcCGUGGUCGU----------UGUCGACga -5'
14195 3' -56.4 NC_003521.1 + 119592 0.66 0.932951
Target:  5'- aCGCUG-GGCGgCGGguGCAGCgucucgUGCUg -3'
miRNA:   3'- aGCGAUgCCGUgGUCguUGUCG------ACGA- -5'
14195 3' -56.4 NC_003521.1 + 30324 0.66 0.937792
Target:  5'- gCGCUccagcaACuGCGCCAGCGAguCGGCgGCg -3'
miRNA:   3'- aGCGA------UGcCGUGGUCGUU--GUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 182404 0.66 0.927358
Target:  5'- gCGCUGCGGCuucgucaACCGccGCAucacGCGGCcGCg -3'
miRNA:   3'- aGCGAUGCCG-------UGGU--CGU----UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 207531 0.66 0.927878
Target:  5'- uUCGC--CGGCauguACgAGCucucGCAGCUGCUg -3'
miRNA:   3'- -AGCGauGCCG----UGgUCGu---UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 102455 0.66 0.927878
Target:  5'- cUGUUACGGCGCagCAGgAugAGCUgGCa -3'
miRNA:   3'- aGCGAUGCCGUG--GUCgUugUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 75618 0.66 0.942404
Target:  5'- gCGCcACGGCucagucGCCgacgaugacgacGGCAACAGCgGCg -3'
miRNA:   3'- aGCGaUGCCG------UGG------------UCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 98629 0.66 0.927878
Target:  5'- -gGCgagaGCGGCGgCGGCggUAGCgGCg -3'
miRNA:   3'- agCGa---UGCCGUgGUCGuuGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 84752 0.66 0.922575
Target:  5'- cUUGCUcgggcGCGGCGgCGGCGAC-GUUGUUg -3'
miRNA:   3'- -AGCGA-----UGCCGUgGUCGUUGuCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 124022 0.66 0.937792
Target:  5'- gUGCcGCGGUGCgu-CAGCGGCUGCUu -3'
miRNA:   3'- aGCGaUGCCGUGgucGUUGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 197447 0.66 0.922575
Target:  5'- -gGCcagGCGGCGCCAGC-GCAuGCUcugGCg -3'
miRNA:   3'- agCGa--UGCCGUGGUCGuUGU-CGA---CGa -5'
14195 3' -56.4 NC_003521.1 + 104218 0.66 0.922032
Target:  5'- cUGCUGCaGC-CCAGCGaggacguGgAGCUGCg -3'
miRNA:   3'- aGCGAUGcCGuGGUCGU-------UgUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 74776 0.66 0.937792
Target:  5'- -gGCUggaguaugacgACGGCGgCAGCggUAGCgGCg -3'
miRNA:   3'- agCGA-----------UGCCGUgGUCGuuGUCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.