miRNA display CGI


Results 61 - 80 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 142302 0.66 0.749813
Target:  5'- uGCAGCGGCccaGCCG-CGcGCGUCGUc- -3'
miRNA:   3'- -CGUCGUCGuc-CGGCaGC-CGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 27439 0.66 0.749813
Target:  5'- -aGGCAGCccAGGCCGaauUCGGC--CGUGAg -3'
miRNA:   3'- cgUCGUCG--UCCGGC---AGCCGcgGCACU- -5'
14195 5' -61.6 NC_003521.1 + 126574 0.66 0.749813
Target:  5'- -gGGCAGCGGgaagccGCCGUCG-UGCCgGUGGu -3'
miRNA:   3'- cgUCGUCGUC------CGGCAGCcGCGG-CACU- -5'
14195 5' -61.6 NC_003521.1 + 34383 0.66 0.749813
Target:  5'- cGCAcCAGCAGGUgGU-GGCGCUcgggccagGUGAg -3'
miRNA:   3'- -CGUcGUCGUCCGgCAgCCGCGG--------CACU- -5'
14195 5' -61.6 NC_003521.1 + 84686 0.67 0.744372
Target:  5'- cCAGCAGCugcgugcacaccuccAGGCCGgccucCGGUGCCa--- -3'
miRNA:   3'- cGUCGUCG---------------UCCGGCa----GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 103516 0.67 0.744372
Target:  5'- cCAGCAGCAGGCgCG-CgaacucgcucauggaGGCGUgCGUGGg -3'
miRNA:   3'- cGUCGUCGUCCG-GCaG---------------CCGCG-GCACU- -5'
14195 5' -61.6 NC_003521.1 + 131069 0.67 0.740727
Target:  5'- uGCAGCAGCuGGGCCaGUU--UGCgGUGAc -3'
miRNA:   3'- -CGUCGUCG-UCCGG-CAGccGCGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 181400 0.67 0.740727
Target:  5'- gGCGGCGGCGccGCUGUCGcGUGCCa--- -3'
miRNA:   3'- -CGUCGUCGUc-CGGCAGC-CGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 63144 0.67 0.740727
Target:  5'- aGCAGCAGCugcgcGGGCUGacgaUCGacGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCG-----UCCGGC----AGC--CGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 211984 0.67 0.740727
Target:  5'- cGCcGCAGCucGUCGUCcaGGCGCCGc-- -3'
miRNA:   3'- -CGuCGUCGucCGGCAG--CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 104679 0.67 0.740727
Target:  5'- cGCGGagcucgAGgGGGCCGUgGGCGgCGUcGAc -3'
miRNA:   3'- -CGUCg-----UCgUCCGGCAgCCGCgGCA-CU- -5'
14195 5' -61.6 NC_003521.1 + 188477 0.67 0.740727
Target:  5'- -gAGCuacgAGCAGGCCGUgGGCcuggguccgccGCCGaGAu -3'
miRNA:   3'- cgUCG----UCGUCCGGCAgCCG-----------CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 209473 0.67 0.740727
Target:  5'- uGCAGCGGCucaucAGGCUGUUuaaaGGCgagGCCGcGAu -3'
miRNA:   3'- -CGUCGUCG-----UCCGGCAG----CCG---CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 78147 0.67 0.737985
Target:  5'- aGCGGCGGC-GGCCGcgaacgaggcacgaUCcugguGGCGCCGa-- -3'
miRNA:   3'- -CGUCGUCGuCCGGC--------------AG-----CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 16768 0.67 0.732479
Target:  5'- cGCcauGCAGCAGGUCGguuuucagaugcugcCGGCGCCc--- -3'
miRNA:   3'- -CGu--CGUCGUCCGGCa--------------GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 139364 0.67 0.731558
Target:  5'- uGUAGCAGCuGGCgaa-GaGCGCCGUGc -3'
miRNA:   3'- -CGUCGUCGuCCGgcagC-CGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 155492 0.67 0.731558
Target:  5'- gGCcuGCGGCGGGCCG-CGG-GCCa--- -3'
miRNA:   3'- -CGu-CGUCGUCCGGCaGCCgCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 133181 0.67 0.731558
Target:  5'- aGCAGUGGC-GGCC-UCGGCGaUCGgGAc -3'
miRNA:   3'- -CGUCGUCGuCCGGcAGCCGC-GGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 35484 0.67 0.731558
Target:  5'- cGCAGCuGCcgccGCCGaggaGGCGCCGUa- -3'
miRNA:   3'- -CGUCGuCGuc--CGGCag--CCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 92010 0.67 0.731558
Target:  5'- -gAGCGGCgAGGCgCGgcggCGGCgGCgGUGGg -3'
miRNA:   3'- cgUCGUCG-UCCG-GCa---GCCG-CGgCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.