Results 41 - 60 of 304 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 53512 | 0.66 | 0.767704 |
Target: 5'- uGCGGCGucGCAgcGGCCGaUGGUGCUGUc- -3' miRNA: 3'- -CGUCGU--CGU--CCGGCaGCCGCGGCAcu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 220936 | 0.66 | 0.767704 |
Target: 5'- aCAGCAGCAGGa--UCaGCGCCGa-- -3' miRNA: 3'- cGUCGUCGUCCggcAGcCGCGGCacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 84762 | 0.66 | 0.767704 |
Target: 5'- cGCGGCGGCGGcgacGuuGUUGGCaccGCCGa-- -3' miRNA: 3'- -CGUCGUCGUC----CggCAGCCG---CGGCacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 180825 | 0.66 | 0.767704 |
Target: 5'- cGCuGCuGCAGGCUGcCGGUgaagaGCCGg-- -3' miRNA: 3'- -CGuCGuCGUCCGGCaGCCG-----CGGCacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 190549 | 0.66 | 0.767704 |
Target: 5'- aGCAGCGGCGgacccGGCUGcagCGGCaguacGgCGUGAu -3' miRNA: 3'- -CGUCGUCGU-----CCGGCa--GCCG-----CgGCACU- -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 86679 | 0.66 | 0.765046 |
Target: 5'- uCAGCgcgucgucguaucuGGCGGGCCG-CGGCGgCGa-- -3' miRNA: 3'- cGUCG--------------UCGUCCGGCaGCCGCgGCacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 238742 | 0.66 | 0.758808 |
Target: 5'- cCAGCAGCAGaa-GUCGG-GCCGgcgGAg -3' miRNA: 3'- cGUCGUCGUCcggCAGCCgCGGCa--CU- -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 131103 | 0.66 | 0.758808 |
Target: 5'- cCGGaCGGCGGGgCGgcgCGGCuGCCGgGAa -3' miRNA: 3'- cGUC-GUCGUCCgGCa--GCCG-CGGCaCU- -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 124877 | 0.66 | 0.758808 |
Target: 5'- gGCGGCAGCAGGCaca-GcGCGUCGc-- -3' miRNA: 3'- -CGUCGUCGUCCGgcagC-CGCGGCacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 167404 | 0.66 | 0.758808 |
Target: 5'- uCGGCGuGCAGGUCGgggaaguggCGGCGCagcagGUGGa -3' miRNA: 3'- cGUCGU-CGUCCGGCa--------GCCGCGg----CACU- -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 38515 | 0.66 | 0.758808 |
Target: 5'- cCAGCAGCAGaa-GUCGG-GCCGgcgGAg -3' miRNA: 3'- cGUCGUCGUCcggCAGCCgCGGCa--CU- -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 200334 | 0.66 | 0.758808 |
Target: 5'- uGC-GCuGCGGcGCCGUgGcGCGCCGcgGAc -3' miRNA: 3'- -CGuCGuCGUC-CGGCAgC-CGCGGCa-CU- -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 96606 | 0.66 | 0.758808 |
Target: 5'- -gAGCAgGCAGG-CGUCGGCGCa---- -3' miRNA: 3'- cgUCGU-CGUCCgGCAGCCGCGgcacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 15231 | 0.66 | 0.758808 |
Target: 5'- gGCGGCcgAGCgcgAGGCCGcCGaGCGCCa--- -3' miRNA: 3'- -CGUCG--UCG---UCCGGCaGC-CGCGGcacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 19120 | 0.66 | 0.758808 |
Target: 5'- cGCgGGUGGCGGGCCGcCGGUGUaccaGUcGGa -3' miRNA: 3'- -CG-UCGUCGUCCGGCaGCCGCGg---CA-CU- -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 136623 | 0.66 | 0.756119 |
Target: 5'- uGCAGCAGCacguaaucggccacGGGCgCGgggCGGCGgCGa-- -3' miRNA: 3'- -CGUCGUCG--------------UCCG-GCa--GCCGCgGCacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 35039 | 0.66 | 0.753422 |
Target: 5'- aCAGCAGCuGGaCCGUCGGUugguacuuccagcggGCCa--- -3' miRNA: 3'- cGUCGUCGuCC-GGCAGCCG---------------CGGcacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 126574 | 0.66 | 0.749813 |
Target: 5'- -gGGCAGCGGgaagccGCCGUCG-UGCCgGUGGu -3' miRNA: 3'- cgUCGUCGUC------CGGCAGCcGCGG-CACU- -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 101501 | 0.66 | 0.749813 |
Target: 5'- aGCAGCGGCGgccagacgcGGCCGaccagcaGGCGCUGc-- -3' miRNA: 3'- -CGUCGUCGU---------CCGGCag-----CCGCGGCacu -5' |
|||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 110914 | 0.66 | 0.749813 |
Target: 5'- cGC-GCAGCAGGCgCG-CGGcCGCCc--- -3' miRNA: 3'- -CGuCGUCGUCCG-GCaGCC-GCGGcacu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home