miRNA display CGI


Results 41 - 60 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 50781 0.72 0.410116
Target:  5'- cGCGGCGGUccuGGUCGaUCGGCGaCgGUGAu -3'
miRNA:   3'- -CGUCGUCGu--CCGGC-AGCCGC-GgCACU- -5'
14195 5' -61.6 NC_003521.1 + 139765 0.72 0.418287
Target:  5'- aCGGCAGgAuccGGCCGUCGGCgGCCGccaUGGa -3'
miRNA:   3'- cGUCGUCgU---CCGGCAGCCG-CGGC---ACU- -5'
14195 5' -61.6 NC_003521.1 + 85410 0.72 0.418287
Target:  5'- cCGGCAGCAGGCCucCGGUGCCc--- -3'
miRNA:   3'- cGUCGUCGUCCGGcaGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 188045 0.72 0.418287
Target:  5'- cGguGCAGCGGGuuGUCGaUGCCGcGGu -3'
miRNA:   3'- -CguCGUCGUCCggCAGCcGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 167667 0.72 0.418287
Target:  5'- -aGGUcGCAGGCCGaggCGGCGCCGc-- -3'
miRNA:   3'- cgUCGuCGUCCGGCa--GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 223388 0.72 0.425725
Target:  5'- cGCGGCGccccgacGCGGGCCGUgUGGCGCCc--- -3'
miRNA:   3'- -CGUCGU-------CGUCCGGCA-GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 95227 0.72 0.434922
Target:  5'- uGCAGCAGCgAGGCCa-CGGCcGCCGc-- -3'
miRNA:   3'- -CGUCGUCG-UCCGGcaGCCG-CGGCacu -5'
14195 5' -61.6 NC_003521.1 + 197485 0.72 0.434922
Target:  5'- cGC-GCGGCGGGCCGgaCGGCGCgGa-- -3'
miRNA:   3'- -CGuCGUCGUCCGGCa-GCCGCGgCacu -5'
14195 5' -61.6 NC_003521.1 + 99549 0.72 0.434922
Target:  5'- cGCAGCGGUAGGUgcccauggcguUGUUGGCGUCGa-- -3'
miRNA:   3'- -CGUCGUCGUCCG-----------GCAGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 218631 0.72 0.443381
Target:  5'- cGCGGCGGUAagcggccacGGCCGgCGGCGCCu--- -3'
miRNA:   3'- -CGUCGUCGU---------CCGGCaGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 102353 0.72 0.451933
Target:  5'- gGCGGCAGguGGCagaugUGGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCguCCGgca--GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 142771 0.72 0.451933
Target:  5'- aGCGuccGCGGCGGcGUCGUCGGUGCCa--- -3'
miRNA:   3'- -CGU---CGUCGUC-CGGCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 103767 0.72 0.451933
Target:  5'- aCAGCAG-GGGCCGggCGGUGCC-UGAg -3'
miRNA:   3'- cGUCGUCgUCCGGCa-GCCGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 168427 0.72 0.451933
Target:  5'- -gGGCGGCAGgGCCGcggCGGCgGgCGUGAa -3'
miRNA:   3'- cgUCGUCGUC-CGGCa--GCCG-CgGCACU- -5'
14195 5' -61.6 NC_003521.1 + 155603 0.72 0.451933
Target:  5'- aGCAGCAGCAGGagguggcgaCCGcuguucUCGGCgGCgGUGGu -3'
miRNA:   3'- -CGUCGUCGUCC---------GGC------AGCCG-CGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 192586 0.71 0.460573
Target:  5'- cGCGGaacGCAGGCUGcUCGGCGUCGa-- -3'
miRNA:   3'- -CGUCgu-CGUCCGGC-AGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 138033 0.71 0.460573
Target:  5'- -gAGCuGGC-GGCCGcCGGCGCCGUc- -3'
miRNA:   3'- cgUCG-UCGuCCGGCaGCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 111196 0.71 0.460573
Target:  5'- cGCGGaCGGUGGGCUGggcgaUGGCGCCG-GAa -3'
miRNA:   3'- -CGUC-GUCGUCCGGCa----GCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 24239 0.71 0.469301
Target:  5'- -gGGCAGCGGGCgGUCGG-GCgGUa- -3'
miRNA:   3'- cgUCGUCGUCCGgCAGCCgCGgCAcu -5'
14195 5' -61.6 NC_003521.1 + 53385 0.71 0.469301
Target:  5'- aGCAGgAGCAGGCCG-CGGCGagcaGggGAu -3'
miRNA:   3'- -CGUCgUCGUCCGGCaGCCGCgg--Ca-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.