miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 192311 0.75 0.313424
Target:  5'- cGCGGUAGCGGcGUCGgCGGCaCCGUGGg -3'
miRNA:   3'- -CGUCGUCGUC-CGGCaGCCGcGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 161186 0.75 0.313424
Target:  5'- uGCAGCAGCAGacgacGCCGa-GGCGCCGcGGu -3'
miRNA:   3'- -CGUCGUCGUC-----CGGCagCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 153597 0.74 0.320213
Target:  5'- uGCAGCAGCAGcGCCagGUUGGCGCUc--- -3'
miRNA:   3'- -CGUCGUCGUC-CGG--CAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 85118 0.74 0.326417
Target:  5'- gGCAGCGGCGGGCgGcacguagccucccUCGGCGgCGaUGAc -3'
miRNA:   3'- -CGUCGUCGUCCGgC-------------AGCCGCgGC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 218720 0.74 0.341237
Target:  5'- gGCGGCGGCGGGCgaGaagCGGCGUCGgGAc -3'
miRNA:   3'- -CGUCGUCGUCCGg-Ca--GCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 63227 0.73 0.363241
Target:  5'- gGCAGCGGaacGGCCGgaaccggCGGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCgu-CCGGCa------GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 44164 0.73 0.370791
Target:  5'- aGCAGCAGCuGGcGCCGUCGGUacuCCGcGAg -3'
miRNA:   3'- -CGUCGUCG-UC-CGGCAGCCGc--GGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 101854 0.73 0.378447
Target:  5'- aGCGGCAGCAGGCgG-CGGUacaugaaguaGCCGUc- -3'
miRNA:   3'- -CGUCGUCGUCCGgCaGCCG----------CGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 91010 0.73 0.386209
Target:  5'- aGCuGCAGCAGGUCGgucaCGGCcgGCCGUu- -3'
miRNA:   3'- -CGuCGUCGUCCGGCa---GCCG--CGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 123571 0.73 0.386209
Target:  5'- gGCGGUGGCGGGauggCGgCGGCGCCGgGAg -3'
miRNA:   3'- -CGUCGUCGUCCg---GCaGCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 64347 0.73 0.386209
Target:  5'- cCAGCuGCAGGCCcUgGGCGCCcUGGa -3'
miRNA:   3'- cGUCGuCGUCCGGcAgCCGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 127546 0.73 0.386209
Target:  5'- gGCGGCAGCAcGCCGUCGGC-CagGUGc -3'
miRNA:   3'- -CGUCGUCGUcCGGCAGCCGcGg-CACu -5'
14195 5' -61.6 NC_003521.1 + 129313 0.73 0.389343
Target:  5'- gGCGGCgggaagaggucgcccAGCAGGCgGUUGaGCGCCGcGAa -3'
miRNA:   3'- -CGUCG---------------UCGUCCGgCAGC-CGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 87870 0.73 0.394076
Target:  5'- cGCAgGCgcuGGcCAGGCCGUUGGCGaaGUGGa -3'
miRNA:   3'- -CGU-CG---UC-GUCCGGCAGCCGCggCACU- -5'
14195 5' -61.6 NC_003521.1 + 201852 0.73 0.394076
Target:  5'- uGCuGCGGguGGCUGUUucugGGCGUCGUGc -3'
miRNA:   3'- -CGuCGUCguCCGGCAG----CCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 1625 0.73 0.394076
Target:  5'- uGCuGCGGguGGCUGUUucugGGCGUCGUGc -3'
miRNA:   3'- -CGuCGUCguCCGGCAG----CCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 184342 0.73 0.402045
Target:  5'- cGCAGUacugccucuucgGGCGGGCCGUggcgCGGCGCCu--- -3'
miRNA:   3'- -CGUCG------------UCGUCCGGCA----GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 23835 0.73 0.402045
Target:  5'- cGUGGCGGgAGGCCGaccugcUGGCGCUGUGu -3'
miRNA:   3'- -CGUCGUCgUCCGGCa-----GCCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 50781 0.72 0.410116
Target:  5'- cGCGGCGGUccuGGUCGaUCGGCGaCgGUGAu -3'
miRNA:   3'- -CGUCGUCGu--CCGGC-AGCCGC-GgCACU- -5'
14195 5' -61.6 NC_003521.1 + 94945 0.72 0.410116
Target:  5'- cCGGCGGCcucGUCGUCGGCGCCGc-- -3'
miRNA:   3'- cGUCGUCGuc-CGGCAGCCGCGGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.