miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 15231 0.66 0.758808
Target:  5'- gGCGGCcgAGCgcgAGGCCGcCGaGCGCCa--- -3'
miRNA:   3'- -CGUCG--UCG---UCCGGCaGC-CGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 166420 0.66 0.776495
Target:  5'- cGCGGCA-CAGGUCGUCcaCGCaCGUGu -3'
miRNA:   3'- -CGUCGUcGUCCGGCAGccGCG-GCACu -5'
14195 5' -61.6 NC_003521.1 + 167404 0.66 0.758808
Target:  5'- uCGGCGuGCAGGUCGgggaaguggCGGCGCagcagGUGGa -3'
miRNA:   3'- cGUCGU-CGUCCGGCa--------GCCGCGg----CACU- -5'
14195 5' -61.6 NC_003521.1 + 136623 0.66 0.756119
Target:  5'- uGCAGCAGCacguaaucggccacGGGCgCGgggCGGCGgCGa-- -3'
miRNA:   3'- -CGUCGUCG--------------UCCG-GCa--GCCGCgGCacu -5'
14195 5' -61.6 NC_003521.1 + 42612 0.66 0.793727
Target:  5'- aCGGCcgccGGCGGcGCCGUCGcCGCCaUGGa -3'
miRNA:   3'- cGUCG----UCGUC-CGGCAGCcGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 175108 0.66 0.767704
Target:  5'- cCGGCca-GGGCCGccgCGGCGCCGcUGu -3'
miRNA:   3'- cGUCGucgUCCGGCa--GCCGCGGC-ACu -5'
14195 5' -61.6 NC_003521.1 + 240646 0.66 0.793727
Target:  5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3'
miRNA:   3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 142302 0.66 0.749813
Target:  5'- uGCAGCGGCccaGCCG-CGcGCGUCGUc- -3'
miRNA:   3'- -CGUCGUCGuc-CGGCaGC-CGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 163771 0.66 0.793727
Target:  5'- gGCGGCGGCAacaacGGUag-CGGCGCCa--- -3'
miRNA:   3'- -CGUCGUCGU-----CCGgcaGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 97 0.66 0.793727
Target:  5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3'
miRNA:   3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 110914 0.66 0.749813
Target:  5'- cGC-GCAGCAGGCgCG-CGGcCGCCc--- -3'
miRNA:   3'- -CGuCGUCGUCCG-GCaGCC-GCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 239982 0.66 0.793727
Target:  5'- cCAGCAGUcuucgGGGuaGUCGGUGCCu--- -3'
miRNA:   3'- cGUCGUCG-----UCCggCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 86679 0.66 0.765046
Target:  5'- uCAGCgcgucgucguaucuGGCGGGCCG-CGGCGgCGa-- -3'
miRNA:   3'- cGUCG--------------UCGUCCGGCaGCCGCgGCacu -5'
14195 5' -61.6 NC_003521.1 + 186593 0.66 0.785172
Target:  5'- gGUAGCAGCcgcccGGCaGUCGGUacuGCCG-GAc -3'
miRNA:   3'- -CGUCGUCGu----CCGgCAGCCG---CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 17458 0.66 0.792877
Target:  5'- cGCGGCAGCgcucggAGGagagacgacggcaCCGguagCGGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCG------UCC-------------GGCa---GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 19120 0.66 0.758808
Target:  5'- cGCgGGUGGCGGGCCGcCGGUGUaccaGUcGGa -3'
miRNA:   3'- -CG-UCGUCGUCCGGCaGCCGCGg---CA-CU- -5'
14195 5' -61.6 NC_003521.1 + 96606 0.66 0.758808
Target:  5'- -gAGCAgGCAGG-CGUCGGCGCa---- -3'
miRNA:   3'- cgUCGU-CGUCCgGCAGCCGCGgcacu -5'
14195 5' -61.6 NC_003521.1 + 38515 0.66 0.758808
Target:  5'- cCAGCAGCAGaa-GUCGG-GCCGgcgGAg -3'
miRNA:   3'- cGUCGUCGUCcggCAGCCgCGGCa--CU- -5'
14195 5' -61.6 NC_003521.1 + 200334 0.66 0.758808
Target:  5'- uGC-GCuGCGGcGCCGUgGcGCGCCGcgGAc -3'
miRNA:   3'- -CGuCGuCGUC-CGGCAgC-CGCGGCa-CU- -5'
14195 5' -61.6 NC_003521.1 + 155173 0.66 0.749813
Target:  5'- aCAGCuGGC-GGCCG-CGGCuGCCGgggggGAg -3'
miRNA:   3'- cGUCG-UCGuCCGGCaGCCG-CGGCa----CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.