miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 23835 0.73 0.402045
Target:  5'- cGUGGCGGgAGGCCGaccugcUGGCGCUGUGu -3'
miRNA:   3'- -CGUCGUCgUCCGGCa-----GCCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 24239 0.71 0.469301
Target:  5'- -gGGCAGCGGGCgGUCGG-GCgGUa- -3'
miRNA:   3'- cgUCGUCGUCCGgCAGCCgCGgCAcu -5'
14195 5' -61.6 NC_003521.1 + 27439 0.66 0.749813
Target:  5'- -aGGCAGCccAGGCCGaauUCGGC--CGUGAg -3'
miRNA:   3'- cgUCGUCG--UCCGGC---AGCCGcgGCACU- -5'
14195 5' -61.6 NC_003521.1 + 29871 0.67 0.713
Target:  5'- --cGCAGaAGGCCGU-GGCGCUGUu- -3'
miRNA:   3'- cguCGUCgUCCGGCAgCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 30239 0.69 0.598602
Target:  5'- cGC-GCuGCAGGuCCGcgCGGuUGCCGUGGc -3'
miRNA:   3'- -CGuCGuCGUCC-GGCa-GCC-GCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 30435 0.66 0.793727
Target:  5'- cCAGCugaacauguccaGGC-GGCCGagGGUGCCGaUGAc -3'
miRNA:   3'- cGUCG------------UCGuCCGGCagCCGCGGC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 30982 0.71 0.484329
Target:  5'- aGCAGCAGCugcggaucgggaugGGGCgaCGaCGGCGCCGgcgagGAc -3'
miRNA:   3'- -CGUCGUCG--------------UCCG--GCaGCCGCGGCa----CU- -5'
14195 5' -61.6 NC_003521.1 + 31097 0.67 0.694201
Target:  5'- aCGGCGGC-GGCCGguacacgCGGCGCaacuUGAa -3'
miRNA:   3'- cGUCGUCGuCCGGCa------GCCGCGgc--ACU- -5'
14195 5' -61.6 NC_003521.1 + 33260 0.68 0.665677
Target:  5'- cGC-GCAGCAGGCCGgc-GCGaUCGUGc -3'
miRNA:   3'- -CGuCGUCGUCCGGCagcCGC-GGCACu -5'
14195 5' -61.6 NC_003521.1 + 34383 0.66 0.749813
Target:  5'- cGCAcCAGCAGGUgGU-GGCGCUcgggccagGUGAg -3'
miRNA:   3'- -CGUcGUCGUCCGgCAgCCGCGG--------CACU- -5'
14195 5' -61.6 NC_003521.1 + 35039 0.66 0.753422
Target:  5'- aCAGCAGCuGGaCCGUCGGUugguacuuccagcggGCCa--- -3'
miRNA:   3'- cGUCGUCGuCC-GGCAGCCG---------------CGGcacu -5'
14195 5' -61.6 NC_003521.1 + 35484 0.67 0.731558
Target:  5'- cGCAGCuGCcgccGCCGaggaGGCGCCGUa- -3'
miRNA:   3'- -CGUCGuCGuc--CGGCag--CCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 36967 0.66 0.776495
Target:  5'- cGCAGCggAGCGGGUgcUCGGCGgCGa-- -3'
miRNA:   3'- -CGUCG--UCGUCCGgcAGCCGCgGCacu -5'
14195 5' -61.6 NC_003521.1 + 38164 0.66 0.793727
Target:  5'- uGUAGguGCAGGgCGUCccagcGGgGCCGc-- -3'
miRNA:   3'- -CGUCguCGUCCgGCAG-----CCgCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 38289 0.67 0.697977
Target:  5'- gGCGcGCAGCAGGUgcgagagcuCGUCGGCcagcggguagaggugGCCGUc- -3'
miRNA:   3'- -CGU-CGUCGUCCG---------GCAGCCG---------------CGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 38443 0.66 0.793727
Target:  5'- uGCAGUugcugcugcuggAGCAGGU---CGGCGgCCGUGGg -3'
miRNA:   3'- -CGUCG------------UCGUCCGgcaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 38515 0.66 0.758808
Target:  5'- cCAGCAGCAGaa-GUCGG-GCCGgcgGAg -3'
miRNA:   3'- cGUCGUCGUCcggCAGCCgCGGCa--CU- -5'
14195 5' -61.6 NC_003521.1 + 39002 0.68 0.665677
Target:  5'- gGUAGguGUcgAGGCCGgagCgGGCGCCGccGAa -3'
miRNA:   3'- -CGUCguCG--UCCGGCa--G-CCGCGGCa-CU- -5'
14195 5' -61.6 NC_003521.1 + 39028 0.69 0.570056
Target:  5'- uCAGCAGCGacGGCgGgugUGGCGCCGa-- -3'
miRNA:   3'- cGUCGUCGU--CCGgCa--GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 39417 0.76 0.239867
Target:  5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3'
miRNA:   3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.