miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 222069 0.79 0.177907
Target:  5'- cGCAGCAGCGacCCGUCGGCGCCa--- -3'
miRNA:   3'- -CGUCGUCGUccGGCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 220936 0.66 0.767704
Target:  5'- aCAGCAGCAGGa--UCaGCGCCGa-- -3'
miRNA:   3'- cGUCGUCGUCCggcAGcCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 220507 0.68 0.656112
Target:  5'- aGCAGCAGCGugguGGCC-UCcuggugcugcauGGCGCCGg-- -3'
miRNA:   3'- -CGUCGUCGU----CCGGcAG------------CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 218720 0.74 0.341237
Target:  5'- gGCGGCGGCGGGCgaGaagCGGCGUCGgGAc -3'
miRNA:   3'- -CGUCGUCGUCCGg-Ca--GCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 218631 0.72 0.443381
Target:  5'- cGCGGCGGUAagcggccacGGCCGgCGGCGCCu--- -3'
miRNA:   3'- -CGUCGUCGU---------CCGGCaGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 218439 0.69 0.597647
Target:  5'- aGCGGCGGCAccacggaggacauGGCCGgcaccaCGCCGUGGg -3'
miRNA:   3'- -CGUCGUCGU-------------CCGGCagcc--GCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 218080 0.71 0.478112
Target:  5'- aGCA-CAGCgAGGCgG-CGGCGCCGgUGAc -3'
miRNA:   3'- -CGUcGUCG-UCCGgCaGCCGCGGC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 215444 0.69 0.57954
Target:  5'- -uGGgAGCAGGgUGUcCGGCGCCGagGAa -3'
miRNA:   3'- cgUCgUCGUCCgGCA-GCCGCGGCa-CU- -5'
14195 5' -61.6 NC_003521.1 + 212242 0.7 0.523311
Target:  5'- cGCAGCAGCccGCCGUCcGCGUagucgGUGGc -3'
miRNA:   3'- -CGUCGUCGucCGGCAGcCGCGg----CACU- -5'
14195 5' -61.6 NC_003521.1 + 211984 0.67 0.740727
Target:  5'- cGCcGCAGCucGUCGUCcaGGCGCCGc-- -3'
miRNA:   3'- -CGuCGUCGucCGGCAG--CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 211381 0.78 0.195428
Target:  5'- --cGUAGUAGGCCGUCaGGCGCCGg-- -3'
miRNA:   3'- cguCGUCGUCCGGCAG-CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 209739 0.69 0.608169
Target:  5'- cGCAGCGGCA-GCCa-CGGCaGCCG-GAg -3'
miRNA:   3'- -CGUCGUCGUcCGGcaGCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 209473 0.67 0.740727
Target:  5'- uGCAGCGGCucaucAGGCUGUUuaaaGGCgagGCCGcGAu -3'
miRNA:   3'- -CGUCGUCG-----UCCGGCAG----CCG---CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 207941 0.67 0.731558
Target:  5'- gGCGGCAGCAccGGCgGcgCgGGCGCCa--- -3'
miRNA:   3'- -CGUCGUCGU--CCGgCa-G-CCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 207443 0.67 0.722313
Target:  5'- -gAGCGGC-GGCUGgCGGCGUgUGUGAg -3'
miRNA:   3'- cgUCGUCGuCCGGCaGCCGCG-GCACU- -5'
14195 5' -61.6 NC_003521.1 + 204899 0.67 0.707383
Target:  5'- cGCGGCGggacGguGGCCGcCGauguauauaaagugcGUGCCGUGGc -3'
miRNA:   3'- -CGUCGU----CguCCGGCaGC---------------CGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 203998 0.68 0.627343
Target:  5'- aCAGCAGCGccGGCCcgUGGCG-CGUGAu -3'
miRNA:   3'- cGUCGUCGU--CCGGcaGCCGCgGCACU- -5'
14195 5' -61.6 NC_003521.1 + 203694 0.68 0.665677
Target:  5'- -aAGCcGCGcGGCaUGUUGcGCGCCGUGAu -3'
miRNA:   3'- cgUCGuCGU-CCG-GCAGC-CGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 201852 0.73 0.394076
Target:  5'- uGCuGCGGguGGCUGUUucugGGCGUCGUGc -3'
miRNA:   3'- -CGuCGUCguCCGGCAG----CCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 200334 0.66 0.758808
Target:  5'- uGC-GCuGCGGcGCCGUgGcGCGCCGcgGAc -3'
miRNA:   3'- -CGuCGuCGUC-CGGCAgC-CGCGGCa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.