miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 240646 0.66 0.793727
Target:  5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3'
miRNA:   3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 240626 0.68 0.675219
Target:  5'- gGCGuGCGGCGGGCCGgcCGGuCGgaCGUGu -3'
miRNA:   3'- -CGU-CGUCGUCCGGCa-GCC-GCg-GCACu -5'
14195 5' -61.6 NC_003521.1 + 239982 0.66 0.793727
Target:  5'- cCAGCAGUcuucgGGGuaGUCGGUGCCu--- -3'
miRNA:   3'- cGUCGUCG-----UCCggCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 239644 0.76 0.239867
Target:  5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3'
miRNA:   3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 239256 0.69 0.570056
Target:  5'- uCAGCAGCGacGGCgGgugUGGCGCCGa-- -3'
miRNA:   3'- cGUCGUCGU--CCGgCa--GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 238742 0.66 0.758808
Target:  5'- cCAGCAGCAGaa-GUCGG-GCCGgcgGAg -3'
miRNA:   3'- cGUCGUCGUCcggCAGCCgCGGCa--CU- -5'
14195 5' -61.6 NC_003521.1 + 238670 0.66 0.793727
Target:  5'- uGCAGUugcugcugcuggAGCAGGU---CGGCGgCCGUGGg -3'
miRNA:   3'- -CGUCG------------UCGUCCGgcaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 238088 0.68 0.636938
Target:  5'- aGCAGCAGCcagccagcgAGGCgGUgaCGGCGCUcccgcacgaGUGGc -3'
miRNA:   3'- -CGUCGUCG---------UCCGgCA--GCCGCGG---------CACU- -5'
14195 5' -61.6 NC_003521.1 + 235285 0.67 0.731558
Target:  5'- -uGGCGGC-GGCCGcgcCGGCuGCCGUc- -3'
miRNA:   3'- cgUCGUCGuCCGGCa--GCCG-CGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 234850 0.66 0.785172
Target:  5'- aUAGC-GUGGGCa-UCGGCGUCGUGu -3'
miRNA:   3'- cGUCGuCGUCCGgcAGCCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 233579 0.68 0.684729
Target:  5'- cCGGgAGCAGuGCCGgcuucagaaCGGCGCCaUGAu -3'
miRNA:   3'- cGUCgUCGUC-CGGCa--------GCCGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 232348 0.66 0.767704
Target:  5'- aGCAGUAGCAGcaGUCG-CGGCGgcaCCGcGAa -3'
miRNA:   3'- -CGUCGUCGUC--CGGCaGCCGC---GGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 228707 0.66 0.793727
Target:  5'- uGCAGCcGCAGGUCGcagaucauguugUCGggcuGCGUgGUGAg -3'
miRNA:   3'- -CGUCGuCGUCCGGC------------AGC----CGCGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 226373 0.66 0.785172
Target:  5'- aGCGGCGGCugacGCCGcCGcaGgGCCGUGu -3'
miRNA:   3'- -CGUCGUCGuc--CGGCaGC--CgCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 226150 0.67 0.731558
Target:  5'- cCAGCGGC-GGCacUCGGCGUCGUu- -3'
miRNA:   3'- cGUCGUCGuCCGgcAGCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 224854 0.67 0.731558
Target:  5'- uGUAG-AGCAGGCCGUaGcGCGCCa--- -3'
miRNA:   3'- -CGUCgUCGUCCGGCAgC-CGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 224014 0.78 0.190911
Target:  5'- gGCAGCGGCGGGCCcggcgGUCggggcgGGCGCCGUc- -3'
miRNA:   3'- -CGUCGUCGUCCGG-----CAG------CCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 223765 0.68 0.675219
Target:  5'- cCAGCGGUA--UCGUCGGCGCUGcUGGu -3'
miRNA:   3'- cGUCGUCGUccGGCAGCCGCGGC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 223462 0.67 0.710194
Target:  5'- cCAGUAGCAacgagucucGGCCGUUGGCcaccagcgcguugcGCCGUc- -3'
miRNA:   3'- cGUCGUCGU---------CCGGCAGCCG--------------CGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 223388 0.72 0.425725
Target:  5'- cGCGGCGccccgacGCGGGCCGUgUGGCGCCc--- -3'
miRNA:   3'- -CGUCGU-------CGUCCGGCA-GCCGCGGcacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.