miRNA display CGI


Results 41 - 60 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 39436 0.67 0.731558
Target:  5'- uGCcGCuGCcGGCCGagccCGGCGCCGa-- -3'
miRNA:   3'- -CGuCGuCGuCCGGCa---GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 40365 0.7 0.523311
Target:  5'- cGCuGC-GCAgGGCCuucuccacgauGUCGGCGUCGUGGc -3'
miRNA:   3'- -CGuCGuCGU-CCGG-----------CAGCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 40419 0.66 0.793727
Target:  5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3'
miRNA:   3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 40527 0.67 0.722313
Target:  5'- cCAGCAGC-GGCgacagGUCGGgGuuGUGGa -3'
miRNA:   3'- cGUCGUCGuCCGg----CAGCCgCggCACU- -5'
14195 5' -61.6 NC_003521.1 + 42612 0.66 0.793727
Target:  5'- aCGGCcgccGGCGGcGCCGUCGcCGCCaUGGa -3'
miRNA:   3'- cGUCG----UCGUC-CGGCAGCcGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 43450 0.71 0.47546
Target:  5'- gGCGGCccuggaacucucacAGCGGGCCagcgCGGCGgCCGUGc -3'
miRNA:   3'- -CGUCG--------------UCGUCCGGca--GCCGC-GGCACu -5'
14195 5' -61.6 NC_003521.1 + 43841 0.66 0.776495
Target:  5'- cCGGCcGCGGGcCCGUCacaGGCGCCc--- -3'
miRNA:   3'- cGUCGuCGUCC-GGCAG---CCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 44078 0.67 0.691364
Target:  5'- gGCAGCAgacgguGCAGGCgccgccgccaccacCGUCGcCGCCGgUGAa -3'
miRNA:   3'- -CGUCGU------CGUCCG--------------GCAGCcGCGGC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 44164 0.73 0.370791
Target:  5'- aGCAGCAGCuGGcGCCGUCGGUacuCCGcGAg -3'
miRNA:   3'- -CGUCGUCG-UC-CGGCAGCCGc--GGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 45421 0.7 0.557784
Target:  5'- aGCcGguGCccGCCGUCGGCgcggucauggccucGCCGUGGc -3'
miRNA:   3'- -CGuCguCGucCGGCAGCCG--------------CGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 49484 0.7 0.523311
Target:  5'- -uGGUAuu-GGCCGUCGGCGCCcUGAu -3'
miRNA:   3'- cgUCGUcguCCGGCAGCCGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 49575 0.69 0.608169
Target:  5'- uGCcGC-GUGGGCCG-CGGCGCCGc-- -3'
miRNA:   3'- -CGuCGuCGUCCGGCaGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 50328 0.69 0.570056
Target:  5'- -aGGCAGCGGGUCcUCGGC-CCGUu- -3'
miRNA:   3'- cgUCGUCGUCCGGcAGCCGcGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 50748 0.68 0.656112
Target:  5'- cGCAGCAGCGGGCCagaa-CGUaCGUGAa -3'
miRNA:   3'- -CGUCGUCGUCCGGcagccGCG-GCACU- -5'
14195 5' -61.6 NC_003521.1 + 50781 0.72 0.410116
Target:  5'- cGCGGCGGUccuGGUCGaUCGGCGaCgGUGAu -3'
miRNA:   3'- -CGUCGUCGu--CCGGC-AGCCGC-GgCACU- -5'
14195 5' -61.6 NC_003521.1 + 52059 0.67 0.722313
Target:  5'- aGCAGCGGCAGaugaCG-CGGgGCCGg-- -3'
miRNA:   3'- -CGUCGUCGUCcg--GCaGCCgCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 52252 0.78 0.204742
Target:  5'- gGCAGCGGCAGGCgGUUGuuGuuGUGAu -3'
miRNA:   3'- -CGUCGUCGUCCGgCAGCcgCggCACU- -5'
14195 5' -61.6 NC_003521.1 + 52676 0.69 0.570056
Target:  5'- aGCAGCGGCAccGGCagCGUCGGCGgUGc-- -3'
miRNA:   3'- -CGUCGUCGU--CCG--GCAGCCGCgGCacu -5'
14195 5' -61.6 NC_003521.1 + 53169 0.66 0.785172
Target:  5'- aCGGCGGCgAGGagGUCGGCgacGCCGUcGGu -3'
miRNA:   3'- cGUCGUCG-UCCggCAGCCG---CGGCA-CU- -5'
14195 5' -61.6 NC_003521.1 + 53385 0.71 0.469301
Target:  5'- aGCAGgAGCAGGCCG-CGGCGagcaGggGAu -3'
miRNA:   3'- -CGUCgUCGUCCGGCaGCCGCgg--Ca-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.