miRNA display CGI


Results 41 - 60 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 239644 0.76 0.239867
Target:  5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3'
miRNA:   3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 134998 0.77 0.219433
Target:  5'- aGCAGgGGCAGGCCGU-GGCGUCGc-- -3'
miRNA:   3'- -CGUCgUCGUCCGGCAgCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 52252 0.78 0.204742
Target:  5'- gGCAGCGGCAGGCgGUUGuuGuuGUGAu -3'
miRNA:   3'- -CGUCGUCGUCCGgCAGCcgCggCACU- -5'
14195 5' -61.6 NC_003521.1 + 211381 0.78 0.195428
Target:  5'- --cGUAGUAGGCCGUCaGGCGCCGg-- -3'
miRNA:   3'- cguCGUCGUCCGGCAG-CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 70267 0.78 0.195428
Target:  5'- uGCAGCacgGGCAGGCgcagGUCGGCGCCGa-- -3'
miRNA:   3'- -CGUCG---UCGUCCGg---CAGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 64347 0.73 0.386209
Target:  5'- cCAGCuGCAGGCCcUgGGCGCCcUGGa -3'
miRNA:   3'- cGUCGuCGUCCGGcAgCCGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 127546 0.73 0.386209
Target:  5'- gGCGGCAGCAcGCCGUCGGC-CagGUGc -3'
miRNA:   3'- -CGUCGUCGUcCGGCAGCCGcGg-CACu -5'
14195 5' -61.6 NC_003521.1 + 192586 0.71 0.460573
Target:  5'- cGCGGaacGCAGGCUGcUCGGCGUCGa-- -3'
miRNA:   3'- -CGUCgu-CGUCCGGC-AGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 111196 0.71 0.460573
Target:  5'- cGCGGaCGGUGGGCUGggcgaUGGCGCCG-GAa -3'
miRNA:   3'- -CGUC-GUCGUCCGGCa----GCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 142771 0.72 0.451933
Target:  5'- aGCGuccGCGGCGGcGUCGUCGGUGCCa--- -3'
miRNA:   3'- -CGU---CGUCGUC-CGGCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 168427 0.72 0.451933
Target:  5'- -gGGCGGCAGgGCCGcggCGGCgGgCGUGAa -3'
miRNA:   3'- cgUCGUCGUC-CGGCa--GCCG-CgGCACU- -5'
14195 5' -61.6 NC_003521.1 + 155603 0.72 0.451933
Target:  5'- aGCAGCAGCAGGagguggcgaCCGcuguucUCGGCgGCgGUGGu -3'
miRNA:   3'- -CGUCGUCGUCC---------GGC------AGCCG-CGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 218631 0.72 0.443381
Target:  5'- cGCGGCGGUAagcggccacGGCCGgCGGCGCCu--- -3'
miRNA:   3'- -CGUCGUCGU---------CCGGCaGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 197485 0.72 0.434922
Target:  5'- cGC-GCGGCGGGCCGgaCGGCGCgGa-- -3'
miRNA:   3'- -CGuCGUCGUCCGGCa-GCCGCGgCacu -5'
14195 5' -61.6 NC_003521.1 + 99549 0.72 0.434922
Target:  5'- cGCAGCGGUAGGUgcccauggcguUGUUGGCGUCGa-- -3'
miRNA:   3'- -CGUCGUCGUCCG-----------GCAGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 223388 0.72 0.425725
Target:  5'- cGCGGCGccccgacGCGGGCCGUgUGGCGCCc--- -3'
miRNA:   3'- -CGUCGU-------CGUCCGGCA-GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 85410 0.72 0.418287
Target:  5'- cCGGCAGCAGGCCucCGGUGCCc--- -3'
miRNA:   3'- cGUCGUCGUCCGGcaGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 188045 0.72 0.418287
Target:  5'- cGguGCAGCGGGuuGUCGaUGCCGcGGu -3'
miRNA:   3'- -CguCGUCGUCCggCAGCcGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 201852 0.73 0.394076
Target:  5'- uGCuGCGGguGGCUGUUucugGGCGUCGUGc -3'
miRNA:   3'- -CGuCGUCguCCGGCAG----CCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 87870 0.73 0.394076
Target:  5'- cGCAgGCgcuGGcCAGGCCGUUGGCGaaGUGGa -3'
miRNA:   3'- -CGU-CG---UC-GUCCGGCAGCCGCggCACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.