miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 74188 0.67 0.857966
Target:  5'- cGCGGCGccCGGCGcGCGGCccGACGcCg -3'
miRNA:   3'- uCGCCGUu-GUCGU-CGCCGcaCUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 45537 0.67 0.857966
Target:  5'- gAGCgGGCGccccguCAGCGGCGGCGaaUGGUGAg -3'
miRNA:   3'- -UCG-CCGUu-----GUCGUCGCCGC--ACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 68423 0.67 0.857966
Target:  5'- cGCGGCGACGGCuccgccGGCGccccucaaccGCGUGcCGGu -3'
miRNA:   3'- uCGCCGUUGUCG------UCGC----------CGCACuGCUg -5'
14197 3' -58.5 NC_003521.1 + 166766 0.67 0.857966
Target:  5'- cAGCGGCgcGugAGCucgggacaGGCGGgGUcgGACGAUg -3'
miRNA:   3'- -UCGCCG--UugUCG--------UCGCCgCA--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 152046 0.67 0.857966
Target:  5'- cAGCGGUGcuucacccGCAGguccgucagcuuCAGCuGCGUGAUGGCg -3'
miRNA:   3'- -UCGCCGU--------UGUC------------GUCGcCGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 131721 0.67 0.857966
Target:  5'- uGGUGuGCAACAGCAaucgucGCuGGaCGUGcACGGCc -3'
miRNA:   3'- -UCGC-CGUUGUCGU------CG-CC-GCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 204621 0.67 0.857222
Target:  5'- uGUGGCGACAGCguuugagccgcucGGCcaGGUGcGugGGCa -3'
miRNA:   3'- uCGCCGUUGUCG-------------UCG--CCGCaCugCUG- -5'
14197 3' -58.5 NC_003521.1 + 50888 0.67 0.853474
Target:  5'- cGGCGGCccGCAcgaugaugauaaaucGCGGUGGCGgagGugGAg -3'
miRNA:   3'- -UCGCCGu-UGU---------------CGUCGCCGCa--CugCUg -5'
14197 3' -58.5 NC_003521.1 + 70926 0.67 0.850443
Target:  5'- cAGCGccaGCAggguccACAGCAGCGaGCGgaGCGGCu -3'
miRNA:   3'- -UCGC---CGU------UGUCGUCGC-CGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 109872 0.67 0.850443
Target:  5'- gGGCGGCGGCGGggccacCAGUaacuGCGUG-CGACc -3'
miRNA:   3'- -UCGCCGUUGUC------GUCGc---CGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 93096 0.67 0.850443
Target:  5'- gAGCGGCAugGGUuggAGCuGGgGuUGGCGGu -3'
miRNA:   3'- -UCGCCGUugUCG---UCG-CCgC-ACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 203993 0.67 0.850443
Target:  5'- -cCGGC-ACAGCAGCGccggcccguggcGCGUGAucaCGGCc -3'
miRNA:   3'- ucGCCGuUGUCGUCGC------------CGCACU---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 106595 0.67 0.843515
Target:  5'- gGGCGGCGcggGCAGCuacucggccaAGCGGCaccagcgcuucuccGACGACc -3'
miRNA:   3'- -UCGCCGU---UGUCG----------UCGCCGca------------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 100354 0.67 0.842737
Target:  5'- cGCGGCGAagcCAcGCGGaCGG-GUGACGGg -3'
miRNA:   3'- uCGCCGUU---GU-CGUC-GCCgCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 74897 0.67 0.842737
Target:  5'- uGCGcGaGACGGUGGCGGCG-GugGAg -3'
miRNA:   3'- uCGC-CgUUGUCGUCGCCGCaCugCUg -5'
14197 3' -58.5 NC_003521.1 + 6445 0.67 0.842737
Target:  5'- uGCGaCAACAGCacgggaggAGCGGa-UGACGGCa -3'
miRNA:   3'- uCGCcGUUGUCG--------UCGCCgcACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 46761 0.67 0.842737
Target:  5'- uGGUGGUAGCAGCugauacGgGGCacgGUGugGAUc -3'
miRNA:   3'- -UCGCCGUUGUCGu-----CgCCG---CACugCUG- -5'
14197 3' -58.5 NC_003521.1 + 112078 0.67 0.842737
Target:  5'- cGGUGGgGAuCAGgGGCGGC-UGGCGGg -3'
miRNA:   3'- -UCGCCgUU-GUCgUCGCCGcACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 223249 0.67 0.835649
Target:  5'- cGUGGCAACGaaGGCGGaacagcugcagaucgGUGACGAUg -3'
miRNA:   3'- uCGCCGUUGUcgUCGCCg--------------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 67861 0.67 0.834853
Target:  5'- -aCGGCAGCGGUuGgGGCGgaacgggaggaGACGACu -3'
miRNA:   3'- ucGCCGUUGUCGuCgCCGCa----------CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.