miRNA display CGI


Results 41 - 60 of 430 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 49161 0.66 0.872437
Target:  5'- cGCGGCuGCuGCuGgGGCugauccGUGACGAUu -3'
miRNA:   3'- uCGCCGuUGuCGuCgCCG------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 151318 0.66 0.872437
Target:  5'- aGGCGGCca-GGCgGGUGGCGUccGAgGGCc -3'
miRNA:   3'- -UCGCCGuugUCG-UCGCCGCA--CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 83889 0.66 0.872437
Target:  5'- gAGCGcGCGACAaauGUA-CGGgGUGAUGGCc -3'
miRNA:   3'- -UCGC-CGUUGU---CGUcGCCgCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 149758 0.66 0.868178
Target:  5'- uGCGGCGAgGGCGGCcGCGcGguacgccucaacgccACGGCg -3'
miRNA:   3'- uCGCCGUUgUCGUCGcCGCaC---------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 170209 0.66 0.865299
Target:  5'- uAGUGGCAcgaGgGGUcgucgacuuAGCGGUGgUGAUGACa -3'
miRNA:   3'- -UCGCCGU---UgUCG---------UCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 116359 0.66 0.865299
Target:  5'- cGCGaGC-GCGGCGGCGaacGCGUGccgccGCGGCc -3'
miRNA:   3'- uCGC-CGuUGUCGUCGC---CGCAC-----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 113596 0.66 0.865299
Target:  5'- cGGgGGCAACGGgGGCGGCGcu-CuGCu -3'
miRNA:   3'- -UCgCCGUUGUCgUCGCCGCacuGcUG- -5'
14197 3' -58.5 NC_003521.1 + 196332 0.66 0.865299
Target:  5'- cGGCGGCuGCAGCucgauuuccAGCGcgugcagguaguGCGUGGCGu- -3'
miRNA:   3'- -UCGCCGuUGUCG---------UCGC------------CGCACUGCug -5'
14197 3' -58.5 NC_003521.1 + 224568 0.66 0.865299
Target:  5'- cAGCGGCAGC-GCAGCcgcaGGC-UGAgGuACa -3'
miRNA:   3'- -UCGCCGUUGuCGUCG----CCGcACUgC-UG- -5'
14197 3' -58.5 NC_003521.1 + 124649 0.66 0.865299
Target:  5'- cGCGGCcacaggAGCAGCAGCaGGUGcGcacCGGCa -3'
miRNA:   3'- uCGCCG------UUGUCGUCG-CCGCaCu--GCUG- -5'
14197 3' -58.5 NC_003521.1 + 78138 0.66 0.865299
Target:  5'- gGGC-GCGuUAGCGGCGGCGgccGCGAa -3'
miRNA:   3'- -UCGcCGUuGUCGUCGCCGCac-UGCUg -5'
14197 3' -58.5 NC_003521.1 + 138317 0.66 0.864574
Target:  5'- cGUGGcCGACAuggaccuGCGGCuGCGcGACGGCg -3'
miRNA:   3'- uCGCC-GUUGU-------CGUCGcCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 103317 0.66 0.864574
Target:  5'- cGCGGC-GCuGCAcgucccagaccucGCGGCGccGCGACa -3'
miRNA:   3'- uCGCCGuUGuCGU-------------CGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 104089 0.67 0.860922
Target:  5'- cGCGGCAggacGCGGaaGGCGGCGcgcugccaguccucGGCGGCg -3'
miRNA:   3'- uCGCCGU----UGUCg-UCGCCGCa-------------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 131721 0.67 0.857966
Target:  5'- uGGUGuGCAACAGCAaucgucGCuGGaCGUGcACGGCc -3'
miRNA:   3'- -UCGC-CGUUGUCGU------CG-CC-GCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 44686 0.67 0.857966
Target:  5'- -aCGGCAGCGcCAGCaGCG-GACGAa -3'
miRNA:   3'- ucGCCGUUGUcGUCGcCGCaCUGCUg -5'
14197 3' -58.5 NC_003521.1 + 77221 0.67 0.857966
Target:  5'- gAGCGGagAGCAGCcuaCGGgG-GACGACa -3'
miRNA:   3'- -UCGCCg-UUGUCGuc-GCCgCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 113883 0.67 0.857966
Target:  5'- cGGCGGCAcagcgACAGCAGguaGGCGagcugcUGAgCGAg -3'
miRNA:   3'- -UCGCCGU-----UGUCGUCg--CCGC------ACU-GCUg -5'
14197 3' -58.5 NC_003521.1 + 152046 0.67 0.857966
Target:  5'- cAGCGGUGcuucacccGCAGguccgucagcuuCAGCuGCGUGAUGGCg -3'
miRNA:   3'- -UCGCCGU--------UGUC------------GUCGcCGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 37382 0.67 0.857966
Target:  5'- uGCGGUguucgaGGCGGCGGgGGCGcccgggccuUGuGCGACg -3'
miRNA:   3'- uCGCCG------UUGUCGUCgCCGC---------AC-UGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.